Variant report

Variant	rs59275951
Chromosome Location	chr15:79068649-79068650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78869904..78872050-chr15:79066335..79069045,2	MCF-7	breast:
2	chr15:79067456..79069175-chr15:79164352..79166795,2	K562	blood:

Variant related genes	Relation type
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1564500	0.86[ASN][1000 genomes]
rs16970103	0.87[ASN][1000 genomes]
rs3743056	0.86[ASN][1000 genomes]
rs3743062	0.89[ASN][1000 genomes]
rs3784321	0.95[ASN][1000 genomes]
rs3784323	0.95[ASN][1000 genomes]
rs61671687	0.83[ASN][1000 genomes]
rs7161774	0.85[ASN][1000 genomes]
rs8041974	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv977739	chr15:79062099-79080757	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79043600-79077800	Weak transcription	Brain Germinal Matrix	brain
2	chr15:79051800-79070600	Weak transcription	Fetal Brain Female	brain
3	chr15:79052800-79070600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:79052800-79070800	Weak transcription	Ovary	ovary
5	chr15:79052800-79071000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:79053200-79071000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:79054000-79083200	Weak transcription	Fetal Intestine Small	intestine
8	chr15:79054400-79070600	Weak transcription	HSMM	muscle
9	chr15:79054600-79070000	Weak transcription	Fetal Lung	lung
10	chr15:79054600-79070400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:79054800-79070600	Weak transcription	Adipose Nuclei	Adipose
12	chr15:79055000-79069800	Weak transcription	Left Ventricle	heart
13	chr15:79055000-79076400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:79055800-79070000	Weak transcription	Lung	lung
15	chr15:79056600-79070600	Weak transcription	Right Atrium	heart
16	chr15:79057000-79076400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:79058000-79090000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:79059400-79071000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:79060800-79078600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:79061000-79070400	Weak transcription	HSMMtube	muscle
21	chr15:79061000-79078000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:79061000-79078800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr15:79061000-79078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:79061000-79080000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:79061600-79080400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr15:79062200-79080200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:79062800-79070200	Strong transcription	Fetal Stomach	stomach
28	chr15:79063200-79071600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:79063800-79078600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:79064200-79068800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:79064800-79077200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:79065400-79070600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:79066800-79070400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:79067400-79071800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:79067600-79070600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:79068200-79074200	Enhancers	Fetal Muscle Trunk	muscle
37	chr15:79068200-79074200	Enhancers	Right Ventricle	heart
38	chr15:79068400-79072000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:79068600-79068800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:79068600-79069000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:79068600-79069000	Enhancers	Osteobl	bone
42	chr15:79068600-79069200	Enhancers	Spleen	Spleen
43	chr15:79068600-79069200	Enhancers	NHDF-Ad	bronchial
44	chr15:79068600-79074200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links