Variant report

Variant	rs61671687
Chromosome Location	chr15:79070159-79070160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:79069323..79071034-chr15:79102065..79103655,2	K562	blood:
2	chr15:78266206..78268014-chr15:79069467..79071102,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136378	Chromatin interaction
ENSG00000185787	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59275951	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv977739	chr15:79062099-79080757	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv904432	chr15:79066932-79175813	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79043600-79077800	Weak transcription	Brain Germinal Matrix	brain
2	chr15:79051800-79070600	Weak transcription	Fetal Brain Female	brain
3	chr15:79052800-79070600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:79052800-79070800	Weak transcription	Ovary	ovary
5	chr15:79052800-79071000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:79053200-79071000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:79054000-79083200	Weak transcription	Fetal Intestine Small	intestine
8	chr15:79054400-79070600	Weak transcription	HSMM	muscle
9	chr15:79054600-79070400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:79054800-79070600	Weak transcription	Adipose Nuclei	Adipose
11	chr15:79055000-79076400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:79056600-79070600	Weak transcription	Right Atrium	heart
13	chr15:79057000-79076400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:79058000-79090000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:79059400-79071000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:79060800-79078600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:79061000-79070400	Weak transcription	HSMMtube	muscle
18	chr15:79061000-79078000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:79061000-79078800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:79061000-79078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:79061000-79080000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:79061600-79080400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:79062200-79080200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:79062800-79070200	Strong transcription	Fetal Stomach	stomach
25	chr15:79063200-79071600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:79063800-79078600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:79064800-79077200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:79065400-79070600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:79066800-79070400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:79067400-79071800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:79067600-79070600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:79068200-79074200	Enhancers	Fetal Muscle Trunk	muscle
33	chr15:79068200-79074200	Enhancers	Right Ventricle	heart
34	chr15:79068400-79072000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:79068600-79074200	Enhancers	Fetal Muscle Leg	muscle
36	chr15:79069000-79080000	Weak transcription	Osteobl	bone
37	chr15:79069200-79070400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:79069200-79070600	Weak transcription	Spleen	Spleen
39	chr15:79069200-79070800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:79069200-79070800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:79069200-79090200	Weak transcription	NHDF-Ad	bronchial
42	chr15:79069400-79075600	Enhancers	Fetal Brain Male	brain
43	chr15:79069800-79072800	Enhancers	Placenta	Placenta
44	chr15:79069800-79073800	Enhancers	Fetal Heart	heart
45	chr15:79069800-79074000	Enhancers	Left Ventricle	heart
46	chr15:79070000-79070600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr15:79070000-79072200	Enhancers	Fetal Lung	lung
48	chr15:79070000-79072200	Enhancers	Lung	lung

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