The 2.0 version of rSNPBase
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Variant report
Variant
rs59276755
Chromosome Location
chr5:35271513-35271514
allele
C/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:4)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:4 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr5:35227292..35232532-chr5:35268610..35275737,14
MCF-7
breast:
2
chr5:35271294..35274263-chr5:35275782..35279580,3
MCF-7
breast:
3
chr5:35269820..35271548-chr5:35271656..35274185,2
MCF-7
breast:
4
chr5:35230384..35232037-chr5:35270698..35273442,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000113494
Chromatin interaction
Extended variants information (count: 4 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:3)
rs_ID
r
2
[population]
rs10472964
1.00[AMR][1000 genomes]
rs73084917
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73084932
1.00[AMR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv597811
chr5:35270560-35305669
Enhancers Weak transcription ZNF genes & repeats
Chromatin interactive region
2 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links