Variant report

Variant	rs59280608
Chromosome Location	chr8:103496596-103496597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103495118..103497591-chr8:103502414..103504461,2	MCF-7	breast:
2	chr8:103491067..103493841-chr8:103494872..103496600,2	MCF-7	breast:
3	chr8:103495758..103497650-chr8:103613429..103615117,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55651645	1.00[AMR][1000 genomes]
rs55800274	1.00[AMR][1000 genomes]
rs55806827	1.00[AMR][1000 genomes]
rs56392012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56392440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57430570	1.00[AMR][1000 genomes]
rs58462905	1.00[AMR][1000 genomes]
rs59120811	1.00[AMR][1000 genomes]
rs59149565	1.00[AMR][1000 genomes]
rs60142605	1.00[AMR][1000 genomes]
rs60914912	1.00[AMR][1000 genomes]
rs61088533	1.00[AMR][1000 genomes]
rs61179172	1.00[AMR][1000 genomes]
rs61379180	1.00[AMR][1000 genomes]
rs6985752	1.00[AMR][1000 genomes]
rs7007727	1.00[AMR][1000 genomes]
rs73698721	1.00[AMR][1000 genomes]
rs73698726	1.00[AMR][1000 genomes]
rs73698730	1.00[AMR][1000 genomes]
rs73698732	1.00[AMR][1000 genomes]
rs73698734	1.00[AMR][1000 genomes]
rs73698739	1.00[AMR][1000 genomes]
rs73698741	1.00[AMR][1000 genomes]
rs73698744	1.00[AMR][1000 genomes]
rs73698745	1.00[AMR][1000 genomes]
rs73698746	1.00[AMR][1000 genomes]
rs73698786	1.00[AMR][1000 genomes]
rs73698787	1.00[AMR][1000 genomes]
rs73698790	1.00[AMR][1000 genomes]
rs73698799	1.00[AMR][1000 genomes]
rs73701117	1.00[AMR][1000 genomes]
rs73701120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820662	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
4	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv523096	chr8:103490914-103498788	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103491000-103496600	Weak transcription	Psoas Muscle	Psoas
2	chr8:103491800-103502600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:103494400-103497000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr8:103494600-103496800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:103495800-103496600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:103496200-103496600	Enhancers	Left Ventricle	heart

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