Variant report

Variant	rs59149565
Chromosome Location	chr8:103397727-103397728
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103396157..103398817-chr8:103419395..103421018,2	MCF-7	breast:
2	chr8:103396006..103397979-chr8:103422778..103424559,3	MCF-7	breast:
3	chr8:103396572..103398863-chr8:103422256..103424667,2	K562	blood:
4	chr8:103393395..103395739-chr8:103396622..103399567,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55651645	1.00[AMR][1000 genomes]
rs55800274	1.00[AMR][1000 genomes]
rs55806827	1.00[AMR][1000 genomes]
rs56392012	1.00[AMR][1000 genomes]
rs56392440	1.00[AMR][1000 genomes]
rs57430570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58462905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58489155	1.00[AMR][1000 genomes]
rs58884526	1.00[AMR][1000 genomes]
rs59120811	1.00[AMR][1000 genomes]
rs59280608	1.00[AMR][1000 genomes]
rs59312502	1.00[AMR][1000 genomes]
rs59588939	1.00[AMR][1000 genomes]
rs60142605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60914912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61088533	1.00[AMR][1000 genomes]
rs61179172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61379180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61480994	1.00[AMR][1000 genomes]
rs61636997	1.00[AMR][1000 genomes]
rs6985752	1.00[AMR][1000 genomes]
rs7007727	1.00[AMR][1000 genomes]
rs73698398	1.00[AMR][1000 genomes]
rs73698402	1.00[AMR][1000 genomes]
rs73698721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698741	1.00[AMR][1000 genomes]
rs73698744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698799	1.00[AMR][1000 genomes]
rs73701117	1.00[AMR][1000 genomes]
rs73701120	1.00[AMR][1000 genomes]
rs7820662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
9	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	esv2761454	chr8:103394602-103414235	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103369800-103421000	Weak transcription	Colonic Mucosa	Colon
2	chr8:103372400-103412600	Weak transcription	Fetal Intestine Large	intestine
3	chr8:103372800-103403800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:103372800-103410200	Weak transcription	Fetal Kidney	kidney
5	chr8:103373000-103402400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:103373200-103401400	Weak transcription	Hela-S3	cervix
7	chr8:103380200-103397800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:103381000-103398400	Weak transcription	Fetal Intestine Small	intestine
9	chr8:103384200-103411600	Weak transcription	Lung	lung
10	chr8:103384200-103416800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:103387000-103402800	Weak transcription	Dnd41	blood
12	chr8:103388200-103407200	Weak transcription	Right Ventricle	heart
13	chr8:103388400-103398400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:103388400-103406400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:103388400-103416600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:103388800-103400000	Weak transcription	HUVEC	blood vessel
17	chr8:103390000-103397800	Weak transcription	Esophagus	oesophagus
18	chr8:103392000-103397800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:103393600-103397800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr8:103393600-103398200	Enhancers	Colon Smooth Muscle	Colon
21	chr8:103393600-103400800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr8:103393800-103400600	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr8:103394400-103397800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr8:103394400-103398000	Enhancers	A549	lung
25	chr8:103394600-103407200	Weak transcription	Pancreas	Pancrea
26	chr8:103394800-103403800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:103395000-103398000	Enhancers	Small Intestine	intestine
28	chr8:103395000-103406800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr8:103395200-103397800	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr8:103395200-103398400	Enhancers	Liver	Liver
31	chr8:103395200-103406800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:103395200-103406800	Weak transcription	Brain Substantia Nigra	brain
33	chr8:103395400-103402800	Weak transcription	Thymus	Thymus
34	chr8:103395600-103406800	Weak transcription	Brain Angular Gyrus	brain
35	chr8:103395600-103407200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:103395800-103397800	Weak transcription	Psoas Muscle	Psoas
37	chr8:103395800-103398200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr8:103395800-103398600	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr8:103395800-103400600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr8:103395800-103400600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr8:103395800-103401800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr8:103395800-103402600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr8:103395800-103402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:103395800-103402800	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:103395800-103402800	Weak transcription	Placenta	Placenta
46	chr8:103395800-103406800	Weak transcription	Aorta	Aorta
47	chr8:103395800-103420800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:103395800-103422200	Weak transcription	HSMMtube	muscle
49	chr8:103396000-103398200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr8:103396000-103400400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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