Variant report

Variant	rs59588939
Chromosome Location	chr8:103182290-103182291
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103181766..103184476-chr8:103188129..103189831,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs28437931	1.00[AMR][1000 genomes]
rs57430570	1.00[AMR][1000 genomes]
rs58462905	1.00[AMR][1000 genomes]
rs58489155	1.00[AMR][1000 genomes]
rs58884526	1.00[AMR][1000 genomes]
rs59149565	1.00[AMR][1000 genomes]
rs59312502	1.00[AMR][1000 genomes]
rs60142605	1.00[AMR][1000 genomes]
rs60914912	1.00[AMR][1000 genomes]
rs61179172	1.00[AMR][1000 genomes]
rs61379180	1.00[AMR][1000 genomes]
rs61388020	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61480994	1.00[AMR][1000 genomes]
rs61636997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7007727	1.00[AMR][1000 genomes]
rs73698398	1.00[AMR][1000 genomes]
rs73698402	1.00[AMR][1000 genomes]
rs73698721	1.00[AMR][1000 genomes]
rs73698726	1.00[AMR][1000 genomes]
rs73698730	1.00[AMR][1000 genomes]
rs73698732	1.00[AMR][1000 genomes]
rs73698734	1.00[AMR][1000 genomes]
rs73698739	1.00[AMR][1000 genomes]
rs73698741	1.00[AMR][1000 genomes]
rs73698744	1.00[AMR][1000 genomes]
rs73698745	1.00[AMR][1000 genomes]
rs73698746	1.00[AMR][1000 genomes]
rs73698786	1.00[AMR][1000 genomes]
rs73698787	1.00[AMR][1000 genomes]
rs73698790	1.00[AMR][1000 genomes]
rs7820662	1.00[AMR][1000 genomes]
rs7841168	1.00[AMR][1000 genomes]
rs7842176	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103175200-103182400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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