Variant report

Variant	rs59296646
Chromosome Location	chr5:113026026-113026027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:45194854..45196880-chr5:113025407..113026907,3	K562	blood:
2	chr1:45195240..45197624-chr5:113025407..113028387,4	K562	blood:

Variant related genes	Relation type
ENSG00000200169	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12653115	0.82[AMR][1000 genomes]
rs12659463	0.82[AMR][1000 genomes]
rs17135950	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17335486	1.00[ASN][1000 genomes]
rs2416326	1.00[EUR][1000 genomes]
rs2416327	1.00[EUR][1000 genomes]
rs4264933	1.00[ASN][1000 genomes]
rs4705582	1.00[ASN][1000 genomes]
rs56410203	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56414024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57999953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58014465	0.82[AMR][1000 genomes]
rs58637852	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59451688	1.00[EUR][1000 genomes]
rs59803677	0.82[AMR][1000 genomes]
rs6874134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885608	1.00[ASN][1000 genomes]
rs6885866	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246983	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248811	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248832	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248835	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248852	1.00[ASN][1000 genomes]
rs73779342	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779358	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779361	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712863	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113018800-113027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:113019000-113028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113023600-113027000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:113025400-113028200	Weak transcription	Fetal Kidney	kidney
5	chr5:113025800-113026800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:113026000-113026200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:113026000-113028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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