Variant report

Variant	rs6885866
Chromosome Location	chr5:113077333-113077334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17135950	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17335486	1.00[ASN][1000 genomes]
rs2416326	0.80[EUR][1000 genomes]
rs2416327	0.80[EUR][1000 genomes]
rs4264933	1.00[ASN][1000 genomes]
rs4705582	1.00[ASN][1000 genomes]
rs56410203	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56414024	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57999953	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58637852	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59296646	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59451688	0.80[EUR][1000 genomes]
rs6594752	0.81[AFR][1000 genomes]
rs6874134	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874820	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885608	1.00[ASN][1000 genomes]
rs73246981	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246983	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248811	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248829	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248832	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248835	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73248852	1.00[ASN][1000 genomes]
rs73779342	1.00[ASN][1000 genomes]
rs73779358	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779361	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712863	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462390	chr5:113076095-113181289	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv471041	chr5:113076095-113181289	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599408	chr5:113076095-113181289	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432799	chr5:113077017-113150101	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113075000-113077600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:113075400-113078000	Weak transcription	Fetal Stomach	stomach
3	chr5:113075600-113078000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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