Variant report

Variant	rs59299513
Chromosome Location	chr3:49585028-49585029
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57654941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61703429	1.00[AMR][1000 genomes]
rs73834010	1.00[AMR][1000 genomes]
rs7610269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49584400-49585200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:49584800-49585400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49585000-49585200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:49585000-49585400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:49585000-49585800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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