Variant report

Variant	rs7610269
Chromosome Location	chr3:49573426-49573427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49565205..49567753-chr3:49570850..49573509,2	K562	blood:
2	chr3:49573308..49575381-chr3:49575652..49577687,3	K562	blood:
3	chr3:49573379..49575748-chr3:49707460..49709611,2	MCF-7	breast:
4	chr3:49572260..49575094-chr3:49709168..49713049,4	K562	blood:
5	chr3:49572703..49574370-chr3:49703529..49706014,2	K562	blood:
6	chr3:49567781..49571690-chr3:49573086..49576036,4	K562	blood:
7	chr3:49573188..49574696-chr3:49711179..49712820,2	MCF-7	breast:
8	chr3:49573308..49575381-chr3:49575652..49577242,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164062	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57654941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59299513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61703429	1.00[AMR][1000 genomes]
rs73834010	1.00[AMR][1000 genomes]
rs7650868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49546200-49577000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:49548400-49577400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:49567800-49574000	Strong transcription	Fetal Intestine Small	intestine
4	chr3:49568200-49577000	Weak transcription	HMEC	breast
5	chr3:49568400-49573600	Weak transcription	Right Atrium	heart
6	chr3:49568800-49576800	Weak transcription	Fetal Heart	heart
7	chr3:49569000-49576800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:49569800-49577000	Weak transcription	Fetal Lung	lung
9	chr3:49569800-49577400	Weak transcription	Fetal Kidney	kidney
10	chr3:49570000-49576800	Weak transcription	K562	blood
11	chr3:49570200-49576800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:49570200-49577200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr3:49570200-49577400	Weak transcription	Small Intestine	intestine
14	chr3:49570400-49574600	Genic enhancers	Fetal Muscle Leg	muscle
15	chr3:49570400-49577400	Weak transcription	GM12878-XiMat	blood
16	chr3:49570600-49574000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:49570600-49574000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:49570600-49577000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:49570600-49577000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:49570600-49577400	Weak transcription	HUVEC	blood vessel
21	chr3:49570800-49574600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:49570800-49574600	Enhancers	Ovary	ovary
23	chr3:49570800-49577000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:49570800-49577000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:49570800-49577000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:49570800-49577000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:49570800-49577000	Weak transcription	NHEK	skin
28	chr3:49570800-49577200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:49570800-49577400	Weak transcription	Aorta	Aorta
30	chr3:49571000-49574800	Enhancers	HSMM	muscle
31	chr3:49571000-49576800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:49571000-49576800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:49571000-49577000	Weak transcription	Primary B cells from peripheral blood	blood
34	chr3:49571000-49577000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:49571000-49577400	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr3:49571200-49573600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr3:49571200-49576800	Weak transcription	Dnd41	blood
38	chr3:49571200-49577000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:49571200-49577000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr3:49571200-49577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:49571200-49577400	Weak transcription	Primary B cells from cord blood	blood
42	chr3:49571200-49577400	Weak transcription	A549	lung
43	chr3:49571400-49574600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:49571400-49574600	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr3:49571400-49574600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:49571400-49575000	Enhancers	Liver	Liver
47	chr3:49571400-49576800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:49571400-49576800	Weak transcription	Fetal Thymus	thymus
49	chr3:49571400-49577000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:49571400-49577000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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