The 2.0 version of rSNPBase

Variant report

Variant rs59302227
Chromosome Location chr12:11877184-11877185
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11827400-11879800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr12:11848800-11879600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr12:11865200-11879400 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr12:11865800-11879800 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr12:11869400-11877400 Enhancers HUVEC blood vessel
6 chr12:11870200-11885000 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr12:11870400-11879600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr12:11870800-11879800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr12:11870800-11879800 Weak transcription Fetal Kidney kidney
10 chr12:11872200-11880200 Weak transcription Fetal Brain Male brain
11 chr12:11872800-11878000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr12:11872800-11879400 Weak transcription Primary T cells from cord blood blood
13 chr12:11872800-11880000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr12:11873000-11877200 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr12:11873000-11879000 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr12:11873000-11882000 Weak transcription H9 Cell Line embryonic stem cell
17 chr12:11873000-11882800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr12:11873200-11877200 Weak transcription Adipose Nuclei Adipose
19 chr12:11873200-11877800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr12:11873200-11881000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr12:11873200-11881000 Weak transcription Placenta Amnion Placenta Amnion
22 chr12:11873200-11902400 Weak transcription Brain Cingulate Gyrus brain
23 chr12:11873200-11909400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr12:11873400-11877400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr12:11873400-11877800 Weak transcription NHEK skin
26 chr12:11873400-11878800 Weak transcription Primary T helper cells PMA-I stimulated --
27 chr12:11873400-11880600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr12:11873400-11894200 Weak transcription NHLF lung
29 chr12:11873600-11881000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr12:11873800-11878800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr12:11873800-11881200 Weak transcription Osteobl bone
32 chr12:11874000-11877800 Weak transcription HMEC breast
33 chr12:11874200-11885400 Genic enhancers Primary hematopoietic stem cells short term culture blood
34 chr12:11874400-11877200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr12:11874400-11878800 Enhancers Small Intestine intestine
36 chr12:11874600-11878400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr12:11875000-11888600 Enhancers Primary B cells from peripheral blood blood
38 chr12:11875200-11877400 Enhancers Psoas Muscle Psoas
39 chr12:11875200-11878400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr12:11875400-11879200 Genic enhancers Fetal Thymus thymus
41 chr12:11875600-11877200 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr12:11875600-11879400 Enhancers Duodenum Mucosa Duodenum
43 chr12:11875600-11883400 Enhancers Stomach Mucosa stomach
44 chr12:11875800-11879200 Weak transcription HepG2 liver
45 chr12:11876000-11878600 Weak transcription Fetal Intestine Small intestine
46 chr12:11876200-11878000 Enhancers Cortex derived primary cultured neurospheres brain
47 chr12:11876400-11878400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr12:11876400-11878600 Enhancers Primary hematopoietic stem cells blood
49 chr12:11876400-11879000 Enhancers Rectal Mucosa Donor 29 rectum
50 chr12:11876400-11879600 Enhancers Fetal Muscle Leg muscle

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Last update: Aug 31, 2015