Variant report

Variant	rs59312539
Chromosome Location	chr11:36319821-36319822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36319061..36322401-chr11:36325495..36327520,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12146689	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12793356	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12796405	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2197601	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2422249	0.86[EUR][1000 genomes]
rs34700060	0.86[EUR][1000 genomes]
rs34786383	0.86[EUR][1000 genomes]
rs4756306	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59622146	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128260	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7942584	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36322600	Weak transcription	Spleen	Spleen
2	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:36311800-36321800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:36314200-36321200	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:36316400-36320400	Enhancers	Adipose Nuclei	Adipose
7	chr11:36317600-36320600	Enhancers	Fetal Intestine Small	intestine
8	chr11:36317600-36320800	Enhancers	Fetal Intestine Large	intestine
9	chr11:36318000-36321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:36318200-36322400	Weak transcription	Placenta	Placenta
11	chr11:36318800-36321800	Weak transcription	Fetal Lung	lung
12	chr11:36319000-36321000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:36319200-36331800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:36319400-36321000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr11:36319400-36321600	Weak transcription	Colonic Mucosa	Colon
16	chr11:36319600-36320600	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:36319600-36321800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:36319600-36321800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:36319600-36322000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:36319600-36323400	Enhancers	Brain Angular Gyrus	brain
21	chr11:36319800-36320000	Weak transcription	Brain Substantia Nigra	brain
22	chr11:36319800-36320200	Enhancers	Brain Hippocampus Middle	brain
23	chr11:36319800-36320800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:36319800-36321800	Weak transcription	Brain Anterior Caudate	brain
25	chr11:36319800-36321800	Weak transcription	Small Intestine	intestine
26	chr11:36319800-36321800	Weak transcription	Hela-S3	cervix

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