Variant report

Variant	rs59622146
Chromosome Location	chr11:36324797-36324798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12146689	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12793356	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12796405	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2197601	0.82[EUR][1000 genomes]
rs4756306	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59312539	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128260	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:36319200-36331800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:36322600-36325800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:36322800-36331400	Weak transcription	Gastric	stomach
6	chr11:36323000-36325400	Weak transcription	HSMMtube	muscle
7	chr11:36323000-36331400	Weak transcription	Lung	lung
8	chr11:36323000-36331400	Weak transcription	Pancreas	Pancrea
9	chr11:36323000-36331400	Weak transcription	Spleen	Spleen
10	chr11:36323000-36333800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:36323000-36334000	Weak transcription	Ovary	ovary
12	chr11:36323000-36334200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:36323000-36335200	Weak transcription	Colonic Mucosa	Colon
14	chr11:36323200-36325400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:36323200-36325400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:36323400-36324800	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:36323400-36325400	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:36323400-36326200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:36323400-36326400	Enhancers	Adipose Nuclei	Adipose
20	chr11:36323800-36325600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:36323800-36331400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:36324000-36333800	Weak transcription	Brain Angular Gyrus	brain
23	chr11:36324600-36325400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links