Variant report

Variant	rs59356360
Chromosome Location	chr7:140172239-140172240
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140170487..140172343-chr7:140174388..140176536,2	K562	blood:
2	chr7:140170034..140173996-chr7:140176770..140179356,4	K562	blood:
3	chr7:140170755..140172962-chr7:140174388..140176743,3	K562	blood:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10243155	0.85[AFR][1000 genomes]
rs10258350	0.85[AFR][1000 genomes]
rs10267810	0.82[AFR][1000 genomes]
rs10278060	0.83[AFR][1000 genomes]
rs10279172	0.82[AFR][1000 genomes]
rs11763850	0.81[EUR][1000 genomes]
rs13438583	0.85[AFR][1000 genomes]
rs2363826	0.81[AFR][1000 genomes]
rs28563126	0.86[AFR][1000 genomes]
rs28699169	0.86[AFR][1000 genomes]
rs28784908	0.86[AFR][1000 genomes]
rs28880113	0.86[AFR][1000 genomes]
rs4424177	0.85[AFR][1000 genomes]
rs4431522	0.81[AFR][1000 genomes]
rs55714045	0.86[AFR][1000 genomes]
rs55780162	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58076938	0.85[AFR][1000 genomes]
rs60137728	0.86[AFR][1000 genomes]
rs61577108	0.84[AFR][1000 genomes]
rs6464779	0.85[AFR][1000 genomes]
rs6962593	0.84[AFR][1000 genomes]
rs7777404	0.85[AFR][1000 genomes]
rs7784558	0.85[AFR][1000 genomes]
rs7787217	0.85[AFR][1000 genomes]
rs7790232	0.84[AFR][1000 genomes]
rs7808589	0.81[AFR][1000 genomes]
rs7811669	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140151000-140173400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:140151800-140176600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:140155600-140175200	Weak transcription	Fetal Brain Male	brain
5	chr7:140156800-140172600	Strong transcription	Fetal Intestine Large	intestine
6	chr7:140156800-140175800	Weak transcription	Fetal Heart	heart
7	chr7:140156800-140175800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:140156800-140177400	Weak transcription	HUVEC	blood vessel
9	chr7:140156800-140177600	Weak transcription	HSMMtube	muscle
10	chr7:140156800-140178000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:140157000-140177600	Weak transcription	NH-A	brain
12	chr7:140158800-140173400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:140159400-140177400	Weak transcription	HSMM	muscle
14	chr7:140159800-140175400	Strong transcription	Fetal Intestine Small	intestine
15	chr7:140160800-140177400	Weak transcription	Osteobl	bone
16	chr7:140161000-140177000	Weak transcription	HMEC	breast
17	chr7:140161000-140177600	Weak transcription	NHDF-Ad	bronchial
18	chr7:140161400-140172400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:140162200-140175800	Weak transcription	Hela-S3	cervix
20	chr7:140162400-140175800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:140165400-140176800	Weak transcription	NHLF	lung
22	chr7:140165600-140176000	Weak transcription	Stomach Mucosa	stomach
23	chr7:140165600-140177400	Weak transcription	Esophagus	oesophagus
24	chr7:140166000-140177000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:140166200-140173000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:140166200-140177600	Weak transcription	Fetal Kidney	kidney
27	chr7:140167400-140177000	Weak transcription	Fetal Brain Female	brain
28	chr7:140168200-140175800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:140169400-140175800	Weak transcription	A549	lung
30	chr7:140169400-140176600	Weak transcription	NHEK	skin
31	chr7:140169400-140177000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:140169600-140177000	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:140169800-140177400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:140170000-140175800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr7:140170200-140173000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:140170200-140175800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr7:140170200-140176600	Weak transcription	Ovary	ovary
38	chr7:140170400-140177600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:140170800-140176400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr7:140170800-140178200	Weak transcription	Gastric	stomach
41	chr7:140171000-140177400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:140171200-140175400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:140171200-140176000	Weak transcription	Brain Germinal Matrix	brain
44	chr7:140171200-140176200	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:140171200-140176400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:140171200-140176600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:140171200-140176600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr7:140171200-140176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:140171200-140176800	Weak transcription	Brain Substantia Nigra	brain
50	chr7:140171200-140177000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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