Variant report

Variant	rs10267810
Chromosome Location	chr7:140172107-140172108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140170487..140172343-chr7:140174388..140176536,2	K562	blood:
2	chr7:140170034..140173996-chr7:140176770..140179356,4	K562	blood:
3	chr7:140164526..140166451-chr7:140169197..140172193,2	K562	blood:
4	chr7:140170755..140172962-chr7:140174388..140176743,3	K562	blood:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10224992	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10226064	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10229678	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10231547	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10243155	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10244642	0.84[EUR][1000 genomes]
rs10256899	0.93[EUR][1000 genomes]
rs10257079	0.96[EUR][1000 genomes]
rs10258350	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10269611	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10270875	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10272040	0.95[EUR][1000 genomes]
rs10272047	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10273061	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10275127	0.96[EUR][1000 genomes]
rs10275142	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10278060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10279172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10280145	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10952680	0.93[EUR][1000 genomes]
rs11760895	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11765962	0.84[EUR][1000 genomes]
rs11766079	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11974068	0.93[EUR][1000 genomes]
rs11978135	0.96[EUR][1000 genomes]
rs12216619	0.96[EUR][1000 genomes]
rs13438384	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13438583	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17161542	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17161569	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1969394	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2272096	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2363824	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2363826	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2363828	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28412759	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28439514	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28538447	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28553284	0.84[EUR][1000 genomes]
rs28563126	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28667371	0.84[EUR][1000 genomes]
rs28699169	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28784908	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28785875	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28832645	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2885922	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28880113	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35747234	0.96[EUR][1000 genomes]
rs4385389	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4424177	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4427086	0.97[EUR][1000 genomes]
rs4431522	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55714045	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55833852	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55961611	0.96[EUR][1000 genomes]
rs56059991	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56769703	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58076938	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58647694	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59356360	0.82[AFR][1000 genomes]
rs59814044	0.93[EUR][1000 genomes]
rs60137728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61577108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62490410	0.84[EUR][1000 genomes]
rs62490429	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62490449	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6464773	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6464779	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6951446	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6962593	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6962710	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963738	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6964170	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6966049	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6966056	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6966930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6968931	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6973069	0.83[EUR][1000 genomes]
rs6975307	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7777404	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7779827	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7784558	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7786776	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7787217	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7789557	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7790232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7800959	0.84[EUR][1000 genomes]
rs7805365	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7808589	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7811669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648837	0.96[EUR][1000 genomes]
rs9692138	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140151000-140173400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:140151200-140172200	Strong transcription	Fetal Stomach	stomach
4	chr7:140151400-140172200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:140151600-140172200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:140151800-140172200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:140151800-140176600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:140152200-140172200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr7:140152400-140172200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:140152600-140172200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:140153800-140172200	Strong transcription	Fetal Muscle Trunk	muscle
12	chr7:140155600-140175200	Weak transcription	Fetal Brain Male	brain
13	chr7:140156800-140172600	Strong transcription	Fetal Intestine Large	intestine
14	chr7:140156800-140175800	Weak transcription	Fetal Heart	heart
15	chr7:140156800-140175800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:140156800-140177400	Weak transcription	HUVEC	blood vessel
17	chr7:140156800-140177600	Weak transcription	HSMMtube	muscle
18	chr7:140156800-140178000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:140157000-140177600	Weak transcription	NH-A	brain
20	chr7:140158800-140173400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:140159400-140177400	Weak transcription	HSMM	muscle
22	chr7:140159800-140175400	Strong transcription	Fetal Intestine Small	intestine
23	chr7:140160200-140172200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:140160800-140177400	Weak transcription	Osteobl	bone
25	chr7:140161000-140177000	Weak transcription	HMEC	breast
26	chr7:140161000-140177600	Weak transcription	NHDF-Ad	bronchial
27	chr7:140161200-140172200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:140161400-140172400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:140162200-140175800	Weak transcription	Hela-S3	cervix
30	chr7:140162400-140175800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:140163400-140172200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr7:140165000-140172200	Strong transcription	Left Ventricle	heart
33	chr7:140165400-140176800	Weak transcription	NHLF	lung
34	chr7:140165600-140176000	Weak transcription	Stomach Mucosa	stomach
35	chr7:140165600-140177400	Weak transcription	Esophagus	oesophagus
36	chr7:140166000-140177000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:140166200-140173000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:140166200-140177600	Weak transcription	Fetal Kidney	kidney
39	chr7:140167200-140172200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr7:140167400-140177000	Weak transcription	Fetal Brain Female	brain
41	chr7:140168200-140175800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:140168800-140172200	Strong transcription	Right Ventricle	heart
43	chr7:140169400-140175800	Weak transcription	A549	lung
44	chr7:140169400-140176600	Weak transcription	NHEK	skin
45	chr7:140169400-140177000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:140169600-140177000	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:140169800-140177400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:140170000-140175800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr7:140170200-140173000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr7:140170200-140175800	Weak transcription	Rectal Smooth Muscle	rectum

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