Variant report

Variant	rs2363824
Chromosome Location	chr7:140135472-140135473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MKRN1-1	chr7:140135116-140135587	NONHSAT123681

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10085669	0.80[AFR][1000 genomes]
rs10216203	1.00[CEU][hapmap]
rs10224992	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10226064	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10229678	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10231547	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10243155	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10244642	0.88[EUR][1000 genomes]
rs10247426	0.80[AFR][1000 genomes]
rs10256899	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10257079	1.00[EUR][1000 genomes]
rs10258350	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10267810	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10269611	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10270875	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10272040	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10272047	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10273061	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10275127	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10275142	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10278060	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs10279172	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10280145	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10952680	0.92[EUR][1000 genomes]
rs11760895	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11765962	0.88[EUR][1000 genomes]
rs11766079	0.97[EUR][1000 genomes]
rs11974068	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11978135	0.85[CEU][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12216619	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13438384	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13438583	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17161542	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17161569	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1969394	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2001941	0.83[EUR][1000 genomes]
rs2272096	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2363826	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2363828	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28412759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28439514	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28538447	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28553284	0.88[EUR][1000 genomes]
rs28563126	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28667371	0.88[EUR][1000 genomes]
rs28699169	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28784908	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28785875	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28832645	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2885922	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs28880113	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35747234	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4385389	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4424177	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4427086	0.96[EUR][1000 genomes]
rs4431522	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs55714045	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55833852	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55961611	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56059991	0.97[EUR][1000 genomes]
rs56769703	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58076938	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58647694	0.97[EUR][1000 genomes]
rs59814044	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60137728	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61577108	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62490410	0.88[EUR][1000 genomes]
rs62490429	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62490449	0.97[EUR][1000 genomes]
rs6464773	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464779	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6951446	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6962593	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6962710	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6963738	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6964170	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6966049	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6966056	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6966930	0.88[EUR][1000 genomes]
rs6968931	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6973069	0.87[EUR][1000 genomes]
rs6975307	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7777404	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7779827	0.96[EUR][1000 genomes]
rs7784558	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7786776	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7787217	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7789557	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7790232	0.96[EUR][1000 genomes]
rs7800959	0.88[EUR][1000 genomes]
rs7805365	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7808166	0.80[AFR][1000 genomes]
rs7808589	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7811669	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9648834	0.80[AFR][1000 genomes]
rs9648837	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9692138	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140126600-140135600	Weak transcription	Gastric	stomach
3	chr7:140126600-140148000	Weak transcription	Primary T cells from cord blood	blood
4	chr7:140133200-140154200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:140135000-140135600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:140135000-140135600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:140135000-140135600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:140135000-140135600	Active TSS	Colon Smooth Muscle	Colon
9	chr7:140135000-140135600	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr7:140135000-140135600	Bivalent Enhancer	Fetal Stomach	stomach
11	chr7:140135000-140135800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:140135000-140135800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:140135000-140135800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:140135000-140135800	Active TSS	Brain Angular Gyrus	brain
15	chr7:140135000-140135800	Active TSS	Right Ventricle	heart
16	chr7:140135200-140135600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:140135200-140135600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:140135200-140135600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:140135200-140135600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr7:140135200-140135600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:140135200-140135600	Active TSS	Brain Anterior Caudate	brain
22	chr7:140135200-140135600	Active TSS	Brain Cingulate Gyrus	brain
23	chr7:140135200-140135600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
24	chr7:140135200-140135600	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr7:140135200-140135600	Active TSS	Duodenum Mucosa	Duodenum
26	chr7:140135200-140135600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr7:140135200-140135600	Enhancers	Fetal Heart	heart
28	chr7:140135200-140135600	Active TSS	Ovary	ovary
29	chr7:140135200-140135800	Active TSS	Fetal Brain Female	brain
30	chr7:140135200-140136200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:140135400-140135600	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr7:140135400-140135600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:140135400-140135600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:140135400-140135600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
35	chr7:140135400-140135600	Active TSS	Stomach Smooth Muscle	stomach
36	chr7:140135400-140135600	Enhancers	Spleen	Spleen
37	chr7:140135400-140135800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:140135400-140135800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:140135400-140135800	Enhancers	Lung	lung
40	chr7:140135400-140135800	Active TSS	NHEK	skin

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