Variant report

Variant	rs9648837
Chromosome Location	chr7:140135118-140135119
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MKRN1-1	chr7:140135116-140135587	NONHSAT123681

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10224992	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10226064	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10229678	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10231547	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10243155	0.96[EUR][1000 genomes]
rs10244642	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10256899	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10257079	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10258350	0.96[EUR][1000 genomes]
rs10267810	0.96[EUR][1000 genomes]
rs10269611	0.99[EUR][1000 genomes]
rs10270875	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10272040	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10272047	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10273061	0.95[EUR][1000 genomes]
rs10275127	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275142	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10278060	0.96[EUR][1000 genomes]
rs10279172	0.96[EUR][1000 genomes]
rs10280145	0.99[EUR][1000 genomes]
rs10952680	0.92[EUR][1000 genomes]
rs11760895	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11765962	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11766079	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11974068	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978135	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216619	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438384	0.96[EUR][1000 genomes]
rs13438583	0.96[EUR][1000 genomes]
rs17161542	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17161569	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1969394	0.96[EUR][1000 genomes]
rs2001941	0.83[EUR][1000 genomes]
rs2272096	0.99[EUR][1000 genomes]
rs2363824	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2363826	0.99[EUR][1000 genomes]
rs2363828	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28412759	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28439514	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28538447	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28553284	0.88[EUR][1000 genomes]
rs28563126	0.95[EUR][1000 genomes]
rs28667371	0.88[EUR][1000 genomes]
rs28699169	0.95[EUR][1000 genomes]
rs28784908	0.96[EUR][1000 genomes]
rs28785875	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28832645	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2885922	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28880113	0.96[EUR][1000 genomes]
rs35747234	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385389	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4424177	0.96[EUR][1000 genomes]
rs4427086	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4431522	0.95[EUR][1000 genomes]
rs55714045	0.96[EUR][1000 genomes]
rs55833852	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55961611	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56059991	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56769703	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58076938	0.96[EUR][1000 genomes]
rs58647694	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59814044	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60137728	0.96[EUR][1000 genomes]
rs61577108	0.96[EUR][1000 genomes]
rs62490410	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62490429	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62490449	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6464773	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6464779	0.99[EUR][1000 genomes]
rs6951446	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6962593	0.93[EUR][1000 genomes]
rs6962710	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6963738	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6964170	0.93[EUR][1000 genomes]
rs6966049	0.96[EUR][1000 genomes]
rs6966056	0.96[EUR][1000 genomes]
rs6966930	0.88[EUR][1000 genomes]
rs6968931	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6973069	0.87[EUR][1000 genomes]
rs6975307	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7777404	0.96[EUR][1000 genomes]
rs7779827	0.96[EUR][1000 genomes]
rs7784558	0.99[EUR][1000 genomes]
rs7786776	0.96[EUR][1000 genomes]
rs7787217	0.96[EUR][1000 genomes]
rs7789557	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7790232	0.96[EUR][1000 genomes]
rs7800959	0.88[EUR][1000 genomes]
rs7805365	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7808589	0.96[EUR][1000 genomes]
rs7811669	0.93[EUR][1000 genomes]
rs9692138	0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140135200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
3	chr7:140126600-140135600	Weak transcription	Gastric	stomach
4	chr7:140126600-140148000	Weak transcription	Primary T cells from cord blood	blood
5	chr7:140133200-140154200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:140135000-140135200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:140135000-140135200	Enhancers	Fetal Brain Male	brain
8	chr7:140135000-140135200	Bivalent/Poised TSS	Fetal Brain Female	brain
9	chr7:140135000-140135200	Enhancers	Ovary	ovary
10	chr7:140135000-140135200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
11	chr7:140135000-140135200	Active TSS	Stomach Smooth Muscle	stomach
12	chr7:140135000-140135400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
13	chr7:140135000-140135400	Enhancers	Pancreas	Pancrea
14	chr7:140135000-140135600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:140135000-140135600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:140135000-140135600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:140135000-140135600	Active TSS	Colon Smooth Muscle	Colon
18	chr7:140135000-140135600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr7:140135000-140135600	Bivalent Enhancer	Fetal Stomach	stomach
20	chr7:140135000-140135800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:140135000-140135800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:140135000-140135800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:140135000-140135800	Active TSS	Brain Angular Gyrus	brain
24	chr7:140135000-140135800	Active TSS	Right Ventricle	heart

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