Variant report

Variant	rs10256899
Chromosome Location	chr7:140134289-140134290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140131947..140134887-chr7:140163367..140165544,2	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10224992	0.96[EUR][1000 genomes]
rs10226064	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10229678	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10231547	0.96[EUR][1000 genomes]
rs10243155	0.93[EUR][1000 genomes]
rs10244642	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10257079	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10258350	0.93[EUR][1000 genomes]
rs10267810	0.93[EUR][1000 genomes]
rs10269611	0.96[EUR][1000 genomes]
rs10270875	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272040	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10272047	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273061	0.92[EUR][1000 genomes]
rs10275127	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10275142	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10278060	0.93[EUR][1000 genomes]
rs10279172	0.93[EUR][1000 genomes]
rs10280145	0.96[EUR][1000 genomes]
rs10952680	0.89[EUR][1000 genomes]
rs11760895	0.96[EUR][1000 genomes]
rs11765962	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11766079	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11974068	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11978135	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12216619	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13438384	0.93[EUR][1000 genomes]
rs13438583	0.93[EUR][1000 genomes]
rs17161542	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17161569	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1969394	0.93[EUR][1000 genomes]
rs2001941	0.85[EUR][1000 genomes]
rs2272096	0.96[EUR][1000 genomes]
rs2363824	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2363826	0.96[EUR][1000 genomes]
rs2363828	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28412759	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28439514	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28538447	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28553284	0.90[EUR][1000 genomes]
rs28563126	0.92[EUR][1000 genomes]
rs28667371	0.90[EUR][1000 genomes]
rs28699169	0.92[EUR][1000 genomes]
rs28784908	0.93[EUR][1000 genomes]
rs28785875	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28832645	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2885922	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28880113	0.93[EUR][1000 genomes]
rs35747234	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4385389	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4424177	0.93[EUR][1000 genomes]
rs4427086	0.93[EUR][1000 genomes]
rs4431522	0.92[EUR][1000 genomes]
rs55714045	0.93[EUR][1000 genomes]
rs55833852	0.96[EUR][1000 genomes]
rs55961611	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56059991	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56769703	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58076938	0.93[EUR][1000 genomes]
rs58647694	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59814044	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60137728	0.93[EUR][1000 genomes]
rs61577108	0.93[EUR][1000 genomes]
rs62490410	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62490429	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62490449	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6464773	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6464779	0.96[EUR][1000 genomes]
rs6951446	0.96[EUR][1000 genomes]
rs6962593	0.91[EUR][1000 genomes]
rs6962710	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6963738	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6964170	0.91[EUR][1000 genomes]
rs6966049	0.93[EUR][1000 genomes]
rs6966056	0.93[EUR][1000 genomes]
rs6966930	0.85[EUR][1000 genomes]
rs6968931	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6973069	0.89[EUR][1000 genomes]
rs6975307	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7777404	0.93[EUR][1000 genomes]
rs7779827	0.93[EUR][1000 genomes]
rs7784558	0.96[EUR][1000 genomes]
rs7786776	0.93[EUR][1000 genomes]
rs7787217	0.93[EUR][1000 genomes]
rs7789557	0.96[EUR][1000 genomes]
rs7790232	0.93[EUR][1000 genomes]
rs7800959	0.90[EUR][1000 genomes]
rs7805365	0.96[EUR][1000 genomes]
rs7808589	0.93[EUR][1000 genomes]
rs7811669	0.91[EUR][1000 genomes]
rs9648837	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9692138	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140135200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
3	chr7:140126600-140135000	Weak transcription	Pancreas	Pancrea
4	chr7:140126600-140135600	Weak transcription	Gastric	stomach
5	chr7:140126600-140148000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:140133200-140154200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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