Variant report

Variant	rs59357000
Chromosome Location	chr3:28966662-28966663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10510612	0.93[ASN][1000 genomes]
rs1463873	0.83[ASN][1000 genomes]
rs17022076	0.83[ASN][1000 genomes]
rs17022080	0.83[ASN][1000 genomes]
rs17022084	0.83[ASN][1000 genomes]
rs17022129	0.83[ASN][1000 genomes]
rs17022147	0.90[ASN][1000 genomes]
rs17022169	0.93[ASN][1000 genomes]
rs17022186	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17022195	1.00[ASN][1000 genomes]
rs1909602	0.81[ASN][1000 genomes]
rs2221153	0.83[ASN][1000 genomes]
rs4016429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55744505	0.83[ASN][1000 genomes]
rs57529509	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58720305	0.93[ASN][1000 genomes]
rs58767158	0.83[ASN][1000 genomes]
rs59924449	1.00[ASN][1000 genomes]
rs60187021	0.83[ASN][1000 genomes]
rs60896865	0.83[ASN][1000 genomes]
rs60978369	0.83[ASN][1000 genomes]
rs61579277	0.83[ASN][1000 genomes]
rs66470677	1.00[ASN][1000 genomes]
rs66504654	0.90[ASN][1000 genomes]
rs67397931	0.83[ASN][1000 genomes]
rs72920904	0.83[ASN][1000 genomes]
rs72920918	0.93[ASN][1000 genomes]
rs72920919	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72920921	0.97[ASN][1000 genomes]
rs72920927	1.00[ASN][1000 genomes]
rs72920940	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72920943	0.95[ASN][1000 genomes]
rs72927837	0.83[ASN][1000 genomes]
rs72927847	0.83[ASN][1000 genomes]
rs72927849	0.83[ASN][1000 genomes]
rs7434023	0.83[ASN][1000 genomes]
rs952628	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv876653	chr3:28819123-29366164	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv876654	chr3:28882980-29105082	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590023	chr3:28926923-29038253	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv998023	chr3:28939535-29207462	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv590024	chr3:28947691-29192092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv590025	chr3:28947691-29201460	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1004914	chr3:28959211-29000177	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1006678	chr3:28959211-29014754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1013490	chr3:28963576-29000177	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv997877	chr3:28963576-29014754	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28966000-28966800	Enhancers	Hela-S3	cervix
2	chr3:28966000-28966800	Enhancers	NHDF-Ad	bronchial
3	chr3:28966200-28966800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:28966200-28966800	Enhancers	A549	lung
5	chr3:28966200-28967000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:28966400-28966800	Active TSS	Psoas Muscle	Psoas
7	chr3:28966400-28966800	Enhancers	HMEC	breast
8	chr3:28966400-28967000	Enhancers	Osteobl	bone
9	chr3:28966600-28966800	Enhancers	Aorta	Aorta
10	chr3:28966600-28966800	Enhancers	NHLF	lung

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