Variant report

Variant	rs952628
Chromosome Location	chr3:28960624-28960625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10510612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1463873	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1500010	1.00[AMR][1000 genomes]
rs17022076	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17022080	0.85[ASN][1000 genomes]
rs17022084	0.85[ASN][1000 genomes]
rs17022110	1.00[AMR][1000 genomes]
rs17022129	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17022147	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17022169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17022186	0.93[ASN][1000 genomes]
rs17022195	0.97[ASN][1000 genomes]
rs1909602	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1965351	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2221153	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4016429	0.97[ASN][1000 genomes]
rs55744505	0.85[ASN][1000 genomes]
rs57529509	0.97[ASN][1000 genomes]
rs58720305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58767158	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59357000	0.97[ASN][1000 genomes]
rs59924449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60187021	0.85[ASN][1000 genomes]
rs60896865	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60978369	0.85[ASN][1000 genomes]
rs61579277	0.85[ASN][1000 genomes]
rs66470677	0.97[ASN][1000 genomes]
rs66504654	0.93[ASN][1000 genomes]
rs67397931	0.85[ASN][1000 genomes]
rs72920904	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72920911	1.00[AMR][1000 genomes]
rs72920918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72920919	0.93[ASN][1000 genomes]
rs72920921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72920923	1.00[AMR][1000 genomes]
rs72920927	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72920940	0.97[ASN][1000 genomes]
rs72920943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72920955	1.00[AMR][1000 genomes]
rs72920958	1.00[AMR][1000 genomes]
rs72920962	1.00[AMR][1000 genomes]
rs72925894	1.00[AMR][1000 genomes]
rs72927814	1.00[AMR][1000 genomes]
rs72927837	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72927847	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72927849	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7434023	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv876653	chr3:28819123-29366164	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv876654	chr3:28882980-29105082	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590023	chr3:28926923-29038253	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv998023	chr3:28939535-29207462	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv590024	chr3:28947691-29192092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv590025	chr3:28947691-29201460	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1004914	chr3:28959211-29000177	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1006678	chr3:28959211-29014754	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28958600-28966600	Weak transcription	Aorta	Aorta
2	chr3:28959600-28965200	Weak transcription	Psoas Muscle	Psoas
3	chr3:28959600-28966600	Weak transcription	NHLF	lung
4	chr3:28960000-28966200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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