Variant report

Variant	rs72925894
Chromosome Location	chr3:28889204-28889205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28880991..28883213-chr3:28887661..28890048,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10510612	1.00[AMR][1000 genomes]
rs1463873	1.00[AMR][1000 genomes]
rs1500010	1.00[AMR][1000 genomes]
rs17022076	1.00[AMR][1000 genomes]
rs17022110	1.00[AMR][1000 genomes]
rs17022129	1.00[AMR][1000 genomes]
rs17022147	1.00[AMR][1000 genomes]
rs17022169	1.00[AMR][1000 genomes]
rs1909602	1.00[AMR][1000 genomes]
rs1965351	1.00[AMR][1000 genomes]
rs2221153	1.00[AMR][1000 genomes]
rs58720305	1.00[AMR][1000 genomes]
rs58767158	1.00[AMR][1000 genomes]
rs59924449	1.00[AMR][1000 genomes]
rs60896865	1.00[AMR][1000 genomes]
rs72920904	1.00[AMR][1000 genomes]
rs72920911	1.00[AMR][1000 genomes]
rs72920918	1.00[AMR][1000 genomes]
rs72920921	1.00[AMR][1000 genomes]
rs72920923	1.00[AMR][1000 genomes]
rs72920943	1.00[AMR][1000 genomes]
rs72920955	1.00[AMR][1000 genomes]
rs72920958	1.00[AMR][1000 genomes]
rs72920962	1.00[AMR][1000 genomes]
rs72927814	1.00[AMR][1000 genomes]
rs72927837	1.00[AMR][1000 genomes]
rs72927847	1.00[AMR][1000 genomes]
rs72927849	1.00[AMR][1000 genomes]
rs7434023	1.00[AMR][1000 genomes]
rs952628	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv590011	chr3:28780713-29044437	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv876652	chr3:28811329-28947691	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876653	chr3:28819123-29366164	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv876654	chr3:28882980-29105082	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28888200-28889800	Enhancers	Fetal Brain Male	brain
2	chr3:28888800-28889600	Enhancers	Fetal Stomach	stomach
3	chr3:28888800-28889600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:28888800-28890400	Enhancers	Brain Germinal Matrix	brain
5	chr3:28889000-28889400	Enhancers	Fetal Muscle Leg	muscle
6	chr3:28889000-28889400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:28889000-28890400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:28889200-28889400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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