Variant report
Variant | rs593839 |
---|---|
Chromosome Location | chr11:18061927-18061928 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10741734 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10832872 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10832874 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11024446 | 0.86[EUR][1000 genomes] |
rs12292490 | 0.85[EUR][1000 genomes] |
rs1401163 | 0.86[EUR][1000 genomes] |
rs1401164 | 0.86[EUR][1000 genomes] |
rs1518522 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1607395 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs169806 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1799913 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1800532 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2056246 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs2071532 | 0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs211106 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs211107 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs211108 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2237907 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2237908 | 0.90[EUR][1000 genomes] |
rs2299625 | 0.86[EUR][1000 genomes] |
rs508924 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs517005 | 0.92[EUR][1000 genomes] |
rs544437 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs546383 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs572940 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs652458 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs654734 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs684302 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs685249 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs685657 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs72862028 | 0.85[EUR][1000 genomes] |
rs7933505 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs887242 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
2 | nsv897026 | chr11:17823296-18084878 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:18042600-18064600 | Weak transcription | Aorta | Aorta |
2 | chr11:18059400-18065400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |