Variant report

Variant	rs59398869
Chromosome Location	chr7:107342634-107342635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10281114	1.00[AMR][1000 genomes]
rs36039758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6962400	1.00[AMR][1000 genomes]
rs6969031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1025008	chr7:107333739-107534235	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107335000-107346400	Weak transcription	Left Ventricle	heart
2	chr7:107335400-107343800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:107335800-107355800	Weak transcription	HSMM	muscle
4	chr7:107338000-107344800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:107338600-107352600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:107338800-107350400	Weak transcription	Brain Germinal Matrix	brain
7	chr7:107340800-107342800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:107341400-107343800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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