Variant report

Variant	rs6962400
Chromosome Location	chr7:107407318-107407319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107382608..107385335-chr7:107406150..107407934,2	MCF-7	breast:
2	chr7:107406820..107409958-chr7:107409972..107413048,3	K562	blood:
3	chr7:107405605..107407378-chr7:107414153..107416023,2	K562	blood:
4	chr7:107407000..107409714-chr7:107530885..107533646,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105879	Chromatin interaction
ENSG00000091140	Chromatin interaction
ENSG00000241764	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10281114	1.00[AMR][1000 genomes]
rs36039758	1.00[AMR][1000 genomes]
rs59398869	1.00[AMR][1000 genomes]
rs6969031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1025008	chr7:107333739-107534235	Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107399400-107407800	Weak transcription	Psoas Muscle	Psoas
2	chr7:107399600-107410800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:107399600-107414000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:107399600-107425800	Weak transcription	Small Intestine	intestine
5	chr7:107399800-107408600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:107399800-107408600	Weak transcription	NHEK	skin
7	chr7:107399800-107439400	Weak transcription	Colonic Mucosa	Colon
8	chr7:107400400-107412000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:107400600-107407800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:107400600-107411600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:107400800-107407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:107401200-107407600	Weak transcription	HepG2	liver
13	chr7:107401400-107408600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:107401400-107408600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:107401400-107412400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:107401400-107425400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:107401600-107408600	Weak transcription	HMEC	breast
18	chr7:107401600-107410400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:107402000-107407800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr7:107404600-107408000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr7:107406400-107408000	Strong transcription	Fetal Intestine Large	intestine
22	chr7:107406400-107408000	Strong transcription	Rectal Mucosa Donor 31	rectum

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