Variant report

Variant	rs59409892
Chromosome Location	chr13:110801264-110801265
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55711914	1.00[AFR][1000 genomes]
rs74124169	1.00[AMR][1000 genomes]
rs8000795	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv901007	chr13:110793123-110813709	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110791200-110802400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:110791200-110807200	Weak transcription	Colonic Mucosa	Colon
3	chr13:110791200-110811600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr13:110791200-110811800	Weak transcription	Right Atrium	heart
5	chr13:110791200-110825600	Weak transcription	Esophagus	oesophagus
6	chr13:110791400-110802200	Weak transcription	Fetal Heart	heart
7	chr13:110791400-110802400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:110791400-110802400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:110791400-110802400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:110791400-110802400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:110791400-110802600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:110791400-110802600	Weak transcription	Pancreas	Pancrea
13	chr13:110791400-110802600	Weak transcription	Spleen	Spleen
14	chr13:110791400-110802600	Weak transcription	NHEK	skin
15	chr13:110791400-110802600	Weak transcription	NHLF	lung
16	chr13:110791400-110802800	Weak transcription	Liver	Liver
17	chr13:110791400-110802800	Weak transcription	Fetal Intestine Small	intestine
18	chr13:110791400-110806600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr13:110791400-110812800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:110791400-110813400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr13:110791400-110820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:110791400-110825800	Weak transcription	A549	lung
23	chr13:110791400-110868400	Weak transcription	Psoas Muscle	Psoas
24	chr13:110791600-110802200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:110791600-110802400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr13:110791600-110802400	Weak transcription	Colon Smooth Muscle	Colon
27	chr13:110792600-110801400	Weak transcription	Fetal Lung	lung
28	chr13:110795600-110802600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:110795800-110826000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr13:110796000-110809200	Weak transcription	Brain Hippocampus Middle	brain
31	chr13:110796800-110801400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:110796800-110802600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr13:110796800-110804000	Strong transcription	Fetal Muscle Trunk	muscle
34	chr13:110796800-110805600	Strong transcription	Adipose Nuclei	Adipose
35	chr13:110797400-110804000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr13:110797600-110802600	Weak transcription	Fetal Stomach	stomach
37	chr13:110797800-110809200	Strong transcription	Stomach Smooth Muscle	stomach
38	chr13:110798200-110808600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr13:110798400-110802800	Strong transcription	Fetal Muscle Leg	muscle
40	chr13:110798400-110825400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:110798600-110802400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr13:110798600-110808200	Strong transcription	Aorta	Aorta
43	chr13:110798800-110802400	Weak transcription	Fetal Kidney	kidney
44	chr13:110798800-110825600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:110798800-110853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr13:110799000-110807800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr13:110799000-110821200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr13:110799400-110802600	Strong transcription	Osteobl	bone
49	chr13:110799600-110802200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr13:110799600-110802600	Strong transcription	HSMM	muscle

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