Variant report

Variant	rs74124169
Chromosome Location	chr13:110790004-110790005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110781644..110784725-chr13:110789802..110792162,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59409892	1.00[AMR][1000 genomes]
rs8000795	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110780600-110790400	Weak transcription	Spleen	Spleen
2	chr13:110784000-110790200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:110784400-110790400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:110787600-110790200	Weak transcription	Aorta	Aorta
5	chr13:110788600-110790200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:110789200-110790200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:110789200-110790200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr13:110789200-110790200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr13:110789200-110790200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:110789200-110790200	Enhancers	Fetal Thymus	thymus
11	chr13:110789200-110790400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
12	chr13:110789200-110790600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
13	chr13:110789200-110791000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr13:110789200-110791600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr13:110789400-110790200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr13:110789400-110790200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr13:110789400-110790200	Enhancers	Lung	lung
18	chr13:110789400-110790400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
19	chr13:110789400-110790400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr13:110789400-110790400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr13:110789400-110790400	Flanking Active TSS	Hela-S3	cervix
22	chr13:110789400-110790400	Flanking Active TSS	NHEK	skin
23	chr13:110789400-110791200	Active TSS	Brain Anterior Caudate	brain
24	chr13:110789400-110791400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr13:110789400-110791600	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr13:110789600-110790200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
27	chr13:110789600-110790200	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr13:110789600-110790200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr13:110789600-110790200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr13:110789600-110790200	Flanking Active TSS	Fetal Heart	heart
31	chr13:110789600-110790200	Enhancers	Fetal Muscle Leg	muscle
32	chr13:110789600-110790200	Enhancers	Placenta	Placenta
33	chr13:110789600-110790200	Enhancers	Pancreas	Pancrea
34	chr13:110789600-110790200	Weak transcription	Psoas Muscle	Psoas
35	chr13:110789600-110790200	Enhancers	Thymus	Thymus
36	chr13:110789600-110790200	Enhancers	K562	blood
37	chr13:110789600-110790400	Enhancers	Primary B cells from peripheral blood	blood
38	chr13:110789600-110790400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr13:110789600-110790400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr13:110789600-110790400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:110789600-110790400	Flanking Active TSS	Fetal Brain Female	brain
42	chr13:110789600-110790400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr13:110789600-110790600	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr13:110789600-110790600	Flanking Active TSS	HMEC	breast
45	chr13:110789600-110790600	Flanking Active TSS	HSMM	muscle
46	chr13:110789600-110790600	Flanking Active TSS	Osteobl	bone
47	chr13:110789600-110790800	Active TSS	Right Ventricle	heart
48	chr13:110789600-110791200	Active TSS	H9 Cell Line	embryonic stem cell
49	chr13:110789600-110791200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr13:110789600-110791400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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