Variant report

Variant	rs59413499
Chromosome Location	chr8:124210303-124210304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:124204021..124206294-chr8:124209568..124211409,2	MCF-7	breast:
2	chr8:124209958..124210898-chr8:124253245..124254086,10	HCT-116	colon:
3	chr8:124195004..124197011-chr8:124208845..124211059,4	MCF-7	breast:
4	chr8:124208405..124211079-chr8:124248116..124249632,2	MCF-7	breast:
5	chr8:124204653..124206246-chr8:124208013..124210724,2	K562	blood:
6	chr8:124197941..124199469-chr8:124208231..124210357,2	K562	blood:
7	chr8:124209172..124211972-chr8:124228008..124229860,2	K562	blood:
8	chr8:124193126..124194820-chr8:124208592..124210892,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266324	Chromatin interaction
ENSG00000253410	Chromatin interaction
ENSG00000253258	Chromatin interaction
ENSG00000243498	Chromatin interaction
ENSG00000147689	Chromatin interaction
ENSG00000189376	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11985341	1.00[EUR][1000 genomes]
rs11990683	1.00[EUR][1000 genomes]
rs11990772	1.00[EUR][1000 genomes]
rs11994660	1.00[EUR][1000 genomes]
rs16898127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16898165	1.00[EUR][1000 genomes]
rs55708440	1.00[EUR][1000 genomes]
rs59355895	1.00[EUR][1000 genomes]
rs61288481	1.00[EUR][1000 genomes]
rs6989437	1.00[EUR][1000 genomes]
rs6996427	1.00[EUR][1000 genomes]
rs7000925	1.00[EUR][1000 genomes]
rs73703766	1.00[EUR][1000 genomes]
rs73703768	1.00[EUR][1000 genomes]
rs73703779	1.00[EUR][1000 genomes]
rs73703788	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124193400-124241200	Weak transcription	Right Atrium	heart
2	chr8:124199800-124216600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:124201600-124212600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124201600-124216000	Strong transcription	NHEK	skin
5	chr8:124201600-124216800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:124202800-124211600	Strong transcription	HMEC	breast
7	chr8:124205200-124217600	Weak transcription	Gastric	stomach
8	chr8:124206200-124215200	Strong transcription	Hela-S3	cervix
9	chr8:124209000-124210600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:124209000-124210800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:124209000-124210800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:124209000-124211000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:124209000-124211000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:124209800-124213400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:124209800-124214000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:124209800-124214000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:124209800-124217200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:124209800-124217600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:124210000-124210600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr8:124210000-124213600	Weak transcription	Esophagus	oesophagus
21	chr8:124210000-124214600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:124210000-124215800	Strong transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links