Variant report

Variant	rs73703788
Chromosome Location	chr8:124276662-124276663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124275161..124277740-chr8:124407199..124409118,2	MCF-7	breast:
2	chr8:124274961..124277233-chr8:124279589..124282392,3	K562	blood:

Variant related genes	Relation type
ENSG00000156802	Chromatin interaction
ENSG00000259305	Chromatin interaction
ENSG00000165156	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11985341	1.00[EUR][1000 genomes]
rs11990683	1.00[EUR][1000 genomes]
rs11990772	1.00[EUR][1000 genomes]
rs11994660	1.00[EUR][1000 genomes]
rs16898127	1.00[EUR][1000 genomes]
rs16898165	1.00[EUR][1000 genomes]
rs55708440	1.00[EUR][1000 genomes]
rs59355895	1.00[EUR][1000 genomes]
rs59413499	1.00[EUR][1000 genomes]
rs61288481	1.00[EUR][1000 genomes]
rs6989437	1.00[EUR][1000 genomes]
rs6996427	1.00[EUR][1000 genomes]
rs7000925	1.00[EUR][1000 genomes]
rs73703766	1.00[EUR][1000 genomes]
rs73703768	1.00[EUR][1000 genomes]
rs73703779	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73703800	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124253600-124284200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:124254000-124284000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:124254000-124284000	Weak transcription	HSMMtube	muscle
4	chr8:124266200-124284400	Weak transcription	Stomach Mucosa	stomach
5	chr8:124267800-124283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:124267800-124285000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:124267800-124285200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:124268200-124277600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:124268200-124281200	Weak transcription	A549	lung
10	chr8:124268200-124281400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:124268200-124284000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:124268200-124284200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:124268400-124281200	Weak transcription	NH-A	brain
14	chr8:124268400-124284400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:124268800-124284200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr8:124270000-124285200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr8:124270200-124277200	Weak transcription	Ovary	ovary
18	chr8:124270200-124284000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:124270200-124284200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:124270200-124284200	Weak transcription	Fetal Kidney	kidney
21	chr8:124270400-124276800	Weak transcription	Esophagus	oesophagus
22	chr8:124270400-124278000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr8:124270400-124281200	Weak transcription	NHLF	lung
24	chr8:124270400-124284000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:124270600-124276800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr8:124270600-124276800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr8:124270600-124276800	Weak transcription	Left Ventricle	heart
28	chr8:124270600-124277200	Weak transcription	HSMM	muscle
29	chr8:124270600-124278000	Weak transcription	HMEC	breast
30	chr8:124270600-124278200	Weak transcription	Brain Anterior Caudate	brain
31	chr8:124270600-124278200	Weak transcription	Pancreas	Pancrea
32	chr8:124270600-124280800	Weak transcription	NHEK	skin
33	chr8:124270600-124281200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:124270600-124281200	Weak transcription	NHDF-Ad	bronchial
35	chr8:124270600-124281400	Weak transcription	Brain Hippocampus Middle	brain
36	chr8:124270600-124281400	Weak transcription	Small Intestine	intestine
37	chr8:124270600-124282000	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:124270600-124283200	Weak transcription	Brain Angular Gyrus	brain
39	chr8:124270600-124283200	Weak transcription	Fetal Brain Female	brain
40	chr8:124270600-124283600	Weak transcription	HepG2	liver
41	chr8:124270600-124284000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr8:124270600-124284000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:124270600-124284000	Weak transcription	Brain Germinal Matrix	brain
44	chr8:124270600-124284000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr8:124270600-124284000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:124270600-124284000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr8:124270600-124284000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:124270600-124284200	Weak transcription	Brain Substantia Nigra	brain
49	chr8:124270600-124284400	Weak transcription	Primary T cells from cord blood	blood
50	chr8:124270600-124284600	Weak transcription	Aorta	Aorta

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