Variant report

Variant	rs59452788
Chromosome Location	chr13:51850207-51850208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51848648..51850306-chr13:51854222..51856639,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17837209	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4941695	0.86[ASN][1000 genomes]
rs4942987	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73195965	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9596491	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
2	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
4	chr13:51834200-51856400	Weak transcription	Gastric	stomach
5	chr13:51837200-51850400	Weak transcription	Adipose Nuclei	Adipose
6	chr13:51837600-51852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:51837800-51860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:51839800-51854600	Weak transcription	Lung	lung
9	chr13:51840000-51852200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:51840000-51852600	Weak transcription	Fetal Stomach	stomach
11	chr13:51841200-51858000	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:51841600-51857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr13:51842200-51851400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:51844200-51853600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:51844600-51851200	Enhancers	Brain Hippocampus Middle	brain
16	chr13:51845000-51852400	Weak transcription	Spleen	Spleen
17	chr13:51845600-51853400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr13:51845800-51851000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr13:51846000-51850400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr13:51846000-51852200	Weak transcription	Fetal Brain Female	brain
21	chr13:51846000-51853400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr13:51846200-51850600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr13:51846200-51852600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr13:51846400-51853600	Weak transcription	Brain Germinal Matrix	brain
25	chr13:51846400-51866400	Weak transcription	Fetal Brain Male	brain
26	chr13:51846600-51865600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:51846600-51865600	Weak transcription	Fetal Lung	lung
28	chr13:51846800-51850600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr13:51847000-51850600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr13:51847000-51850800	Enhancers	Brain Substantia Nigra	brain
31	chr13:51847000-51851800	Weak transcription	Left Ventricle	heart
32	chr13:51847200-51852000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr13:51848000-51854800	Enhancers	Fetal Heart	heart
34	chr13:51848200-51851400	Enhancers	Brain Angular Gyrus	brain
35	chr13:51849000-51851200	Enhancers	Brain Cingulate Gyrus	brain
36	chr13:51849600-51850400	Enhancers	Stomach Smooth Muscle	stomach
37	chr13:51849600-51850600	Enhancers	Rectal Smooth Muscle	rectum
38	chr13:51849600-51851000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr13:51849600-51851200	Enhancers	Brain Anterior Caudate	brain
40	chr13:51849600-51851400	Enhancers	Colon Smooth Muscle	Colon
41	chr13:51849800-51851200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr13:51850000-51850400	Enhancers	Right Ventricle	heart
43	chr13:51850000-51850600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr13:51850000-51850800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr13:51850000-51850800	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr13:51850000-51854800	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr13:51850200-51850600	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr13:51850200-51851000	Enhancers	Right Atrium	heart
49	chr13:51850200-51851200	Enhancers	HUVEC	blood vessel
50	chr13:51850200-51852400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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