Variant report

Variant	rs4941695
Chromosome Location	chr13:51844305-51844306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1022854	0.81[AFR][1000 genomes]
rs17837209	0.86[ASN][1000 genomes]
rs4942987	0.86[ASN][1000 genomes]
rs59452788	0.86[ASN][1000 genomes]
rs6561627	0.91[AFR][1000 genomes]
rs73195965	0.86[ASN][1000 genomes]
rs7995246	0.83[AFR][1000 genomes]
rs9596491	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
2	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
3	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:51834000-51845200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
6	chr13:51834200-51856400	Weak transcription	Gastric	stomach
7	chr13:51836000-51845600	Weak transcription	Fetal Brain Female	brain
8	chr13:51836200-51850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:51836600-51844600	Weak transcription	Brain Germinal Matrix	brain
10	chr13:51837200-51844600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:51837200-51850400	Weak transcription	Adipose Nuclei	Adipose
12	chr13:51837400-51845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:51837600-51852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr13:51837800-51860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:51839400-51845000	Enhancers	Brain Cingulate Gyrus	brain
16	chr13:51839800-51846800	Enhancers	Brain Substantia Nigra	brain
17	chr13:51839800-51850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr13:51839800-51854600	Weak transcription	Lung	lung
19	chr13:51840000-51849600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr13:51840000-51852200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:51840000-51852600	Weak transcription	Fetal Stomach	stomach
22	chr13:51841000-51845800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr13:51841000-51849600	Weak transcription	Colon Smooth Muscle	Colon
24	chr13:51841000-51850200	Weak transcription	Right Atrium	heart
25	chr13:51841200-51858000	Weak transcription	Fetal Muscle Leg	muscle
26	chr13:51841600-51857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr13:51842200-51851400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr13:51842400-51844600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr13:51842600-51846600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr13:51842600-51847800	Enhancers	Brain Anterior Caudate	brain
31	chr13:51843000-51844800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
32	chr13:51843000-51846200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr13:51843200-51845600	Weak transcription	Right Ventricle	heart
34	chr13:51843200-51850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:51843400-51844600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr13:51843400-51845800	Weak transcription	HSMMtube	muscle
37	chr13:51843400-51850200	Weak transcription	HUVEC	blood vessel
38	chr13:51843600-51844600	Weak transcription	Brain Hippocampus Middle	brain
39	chr13:51843600-51845200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:51843600-51847000	Enhancers	Fetal Heart	heart
41	chr13:51843800-51844800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr13:51843800-51846600	Enhancers	Brain Angular Gyrus	brain
43	chr13:51844000-51844400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr13:51844000-51845000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr13:51844000-51845000	Enhancers	Spleen	Spleen
46	chr13:51844000-51845400	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr13:51844000-51846000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr13:51844000-51846600	Enhancers	Fetal Lung	lung
49	chr13:51844000-51847600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr13:51844200-51844400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links