Variant report

Variant	rs6561627
Chromosome Location	chr13:51846066-51846067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51845376..51847763-chr13:51852812..51854700,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1022854	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12585685	0.84[AFR][1000 genomes]
rs17075482	0.86[YRI][hapmap]
rs17075506	0.92[EUR][1000 genomes]
rs2408302	0.84[MKK][hapmap]
rs4941695	0.91[AFR][1000 genomes]
rs7995246	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9596486	0.83[MKK][hapmap]
rs9596491	1.00[ASW][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
2	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
4	chr13:51834200-51856400	Weak transcription	Gastric	stomach
5	chr13:51836200-51850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:51837200-51850400	Weak transcription	Adipose Nuclei	Adipose
7	chr13:51837600-51852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:51837800-51860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:51839800-51846800	Enhancers	Brain Substantia Nigra	brain
10	chr13:51839800-51850200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr13:51839800-51854600	Weak transcription	Lung	lung
12	chr13:51840000-51849600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr13:51840000-51852200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:51840000-51852600	Weak transcription	Fetal Stomach	stomach
15	chr13:51841000-51849600	Weak transcription	Colon Smooth Muscle	Colon
16	chr13:51841000-51850200	Weak transcription	Right Atrium	heart
17	chr13:51841200-51858000	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:51841600-51857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr13:51842200-51851400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:51842600-51846600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr13:51842600-51847800	Enhancers	Brain Anterior Caudate	brain
22	chr13:51843000-51846200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr13:51843200-51850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:51843400-51850200	Weak transcription	HUVEC	blood vessel
25	chr13:51843600-51847000	Enhancers	Fetal Heart	heart
26	chr13:51843800-51846600	Enhancers	Brain Angular Gyrus	brain
27	chr13:51844000-51846600	Enhancers	Fetal Lung	lung
28	chr13:51844000-51847600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr13:51844200-51846200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr13:51844200-51853600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:51844400-51846400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr13:51844400-51846800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:51844600-51846400	Enhancers	Brain Germinal Matrix	brain
34	chr13:51844600-51851200	Enhancers	Brain Hippocampus Middle	brain
35	chr13:51844800-51846400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:51845000-51846400	Enhancers	Fetal Brain Male	brain
37	chr13:51845000-51850000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr13:51845000-51852400	Weak transcription	Spleen	Spleen
39	chr13:51845200-51846200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr13:51845200-51846600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr13:51845400-51846200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr13:51845600-51846200	Enhancers	HSMM	muscle
43	chr13:51845600-51847600	Enhancers	Right Ventricle	heart
44	chr13:51845600-51853400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr13:51845800-51846200	Enhancers	Rectal Smooth Muscle	rectum
46	chr13:51845800-51846200	Enhancers	HSMMtube	muscle
47	chr13:51845800-51847000	Enhancers	Brain Cingulate Gyrus	brain
48	chr13:51845800-51847000	Enhancers	Left Ventricle	heart
49	chr13:51845800-51847200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr13:51845800-51851000	Enhancers	Brain Inferior Temporal Lobe	brain

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