Variant report

Variant	rs59453060
Chromosome Location	chr7:129316986-129316987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11977778	1.00[EUR][1000 genomes]
rs57200963	1.00[EUR][1000 genomes]
rs59703114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60346280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60359190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60363507	1.00[EUR][1000 genomes]
rs60910507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61183623	0.92[AFR][1000 genomes]
rs6968211	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466639	0.85[AFR][1000 genomes]
rs73466652	1.00[EUR][1000 genomes]
rs73470442	1.00[EUR][1000 genomes]
rs73470452	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73470459	1.00[AFR][1000 genomes]
rs73470484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73470496	1.00[EUR][1000 genomes]
rs7811300	1.00[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
3	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
4	chr7:129301000-129330200	Weak transcription	Gastric	stomach
5	chr7:129302000-129317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
7	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:129307200-129352000	Weak transcription	NHLF	lung
9	chr7:129310600-129319200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:129311000-129319400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:129311200-129317800	Strong transcription	Lung	lung
12	chr7:129311200-129318000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:129311200-129319000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr7:129311200-129319000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr7:129311200-129322600	Strong transcription	Fetal Thymus	thymus
16	chr7:129311400-129317200	Strong transcription	Ovary	ovary
17	chr7:129311400-129323800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:129311600-129318600	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr7:129311600-129319400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr7:129312400-129319200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:129313000-129317400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:129313000-129317400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:129313000-129330200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:129313200-129320400	Weak transcription	HMEC	breast
26	chr7:129313200-129321400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr7:129314000-129317800	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:129314200-129319200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:129314400-129318800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:129314400-129330200	Weak transcription	Right Ventricle	heart
31	chr7:129314600-129318200	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:129314600-129329800	Weak transcription	Spleen	Spleen
33	chr7:129314800-129317600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:129314800-129317800	Strong transcription	Thymus	Thymus
35	chr7:129314800-129321200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr7:129314800-129330200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
38	chr7:129315000-129317600	ZNF genes & repeats	Fetal Lung	lung
39	chr7:129315000-129331400	Weak transcription	Colonic Mucosa	Colon
40	chr7:129315200-129317000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:129315200-129317200	Weak transcription	Hela-S3	cervix
42	chr7:129315200-129317800	Weak transcription	A549	lung
43	chr7:129315200-129329200	Weak transcription	NHEK	skin
44	chr7:129315200-129330200	Weak transcription	Brain Angular Gyrus	brain
45	chr7:129315200-129330200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr7:129315200-129341800	Weak transcription	NH-A	brain
47	chr7:129315400-129317000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr7:129315400-129317000	Weak transcription	HepG2	liver
49	chr7:129315400-129317000	Weak transcription	NHDF-Ad	bronchial
50	chr7:129315400-129317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links