Variant report

Variant	rs7811300
Chromosome Location	chr7:129415059-129415060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11977778	1.00[EUR][1000 genomes]
rs2693737	0.85[YRI][hapmap]
rs57200963	1.00[EUR][1000 genomes]
rs59453060	1.00[EUR][1000 genomes]
rs59703114	1.00[EUR][1000 genomes]
rs60359190	1.00[EUR][1000 genomes]
rs60363507	1.00[EUR][1000 genomes]
rs60910507	1.00[EUR][1000 genomes]
rs6968211	1.00[EUR][1000 genomes]
rs73466652	1.00[EUR][1000 genomes]
rs73470442	1.00[EUR][1000 genomes]
rs73470452	1.00[EUR][1000 genomes]
rs73470484	1.00[EUR][1000 genomes]
rs73470496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813824	chr7:129379450-129424461	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
2	esv14232	chr7:129379923-129445465	Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
3	nsv516024	chr7:129387380-129444951	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
4	esv1817678	chr7:129394447-129424461	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
5	nsv464721	chr7:129397644-129444951	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
6	nsv608420	chr7:129397644-129444951	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
7	esv1808977	chr7:129402158-129424461	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	364 gene(s)	inside rSNPs	diseases
8	esv1828133	chr7:129403541-129437113	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
9	esv1843969	chr7:129403541-129446598	Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases
10	esv1802311	chr7:129406936-129442389	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	365 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129381800-129415600	Weak transcription	Pancreas	Pancrea
2	chr7:129396600-129416600	Weak transcription	Esophagus	oesophagus
3	chr7:129397000-129417200	Weak transcription	Hela-S3	cervix
4	chr7:129402800-129417800	Weak transcription	Gastric	stomach
5	chr7:129404800-129415800	Weak transcription	NHEK	skin
6	chr7:129409600-129418200	Weak transcription	Right Atrium	heart
7	chr7:129410600-129417000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:129410800-129415400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr7:129411000-129416600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:129411200-129415600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr7:129411400-129415600	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr7:129411400-129418200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:129412800-129415800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr7:129413000-129415400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr7:129413200-129415200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
16	chr7:129413400-129415400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:129413400-129415800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr7:129413600-129415400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr7:129413800-129415400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr7:129413800-129415600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:129413800-129416200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr7:129414000-129415200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:129414200-129418600	Weak transcription	A549	lung
24	chr7:129414400-129418800	Weak transcription	K562	blood
25	chr7:129414600-129415400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
26	chr7:129415000-129415600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell

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