Variant report

Variant	rs59456852
Chromosome Location	chr11:120652126-120652127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17124307	1.00[AFR][1000 genomes]
rs17124310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2846102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56875020	1.00[AFR][1000 genomes]
rs60946260	1.00[AFR][1000 genomes]
rs73576568	0.93[AFR][1000 genomes]
rs73576588	0.93[AFR][1000 genomes]
rs73578559	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7945234	0.93[AFR][1000 genomes]
rs7946326	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv982961	chr11:120649840-120656069	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120647800-120652200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:120647800-120653400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:120649600-120652400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:120649600-120653400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:120649800-120653400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:120649800-120653400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:120650000-120654000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:120650200-120653600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:120650400-120652200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:120650600-120653400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:120650600-120653800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:120650800-120652400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:120650800-120652400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:120650800-120652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:120650800-120652600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:120650800-120652800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:120651200-120653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:120651400-120653200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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