Variant report

Variant	rs73576588
Chromosome Location	chr11:120647913-120647914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17124307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17124310	0.93[AFR][1000 genomes]
rs17124315	0.93[AFR][1000 genomes]
rs17124317	0.93[AFR][1000 genomes]
rs17124321	0.93[AFR][1000 genomes]
rs56875020	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59456852	0.93[AFR][1000 genomes]
rs60946260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576568	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73576572	1.00[EUR][1000 genomes]
rs73578559	0.93[AFR][1000 genomes]
rs7945234	1.00[AFR][1000 genomes]
rs7946326	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120645400-120649400	Weak transcription	HUVEC	blood vessel
2	chr11:120646200-120649600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:120646600-120650800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:120647000-120648000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:120647000-120648800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:120647200-120648000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:120647400-120649000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:120647400-120649000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:120647600-120648600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:120647600-120648800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:120647600-120648800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:120647600-120648800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:120647600-120648800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:120647600-120649000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:120647800-120648800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:120647800-120648800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:120647800-120648800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:120647800-120648800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:120647800-120649000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:120647800-120649600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:120647800-120649600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:120647800-120652200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:120647800-120653400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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