Variant report

Variant	rs59465929
Chromosome Location	chr5:40623679-40623680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs45535631	1.00[AMR][1000 genomes]
rs56654220	1.00[AMR][1000 genomes]
rs60081776	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40620000-40627600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:40620600-40624800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:40620800-40634200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:40621000-40627600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:40621800-40625600	Enhancers	Primary T cells from cord blood	blood
6	chr5:40622000-40624000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:40622000-40624600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr5:40622000-40624600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr5:40622000-40625000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr5:40622000-40625000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:40622000-40625000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:40622200-40623800	Enhancers	Small Intestine	intestine
13	chr5:40622400-40628200	Weak transcription	Adipose Nuclei	Adipose
14	chr5:40622600-40624200	Enhancers	Thymus	Thymus
15	chr5:40622600-40627400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr5:40622600-40627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:40622600-40627800	Weak transcription	NHDF-Ad	bronchial
18	chr5:40622800-40623800	Enhancers	Duodenum Mucosa	Duodenum
19	chr5:40622800-40627200	Weak transcription	HSMMtube	muscle
20	chr5:40622800-40627400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr5:40622800-40627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:40622800-40627400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr5:40622800-40627800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:40623000-40624200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr5:40623000-40624200	Enhancers	Fetal Thymus	thymus
26	chr5:40623000-40624600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr5:40623000-40624800	Enhancers	Primary T cells fromperipheralblood	blood
28	chr5:40623200-40623800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:40623200-40624000	Enhancers	Fetal Intestine Large	intestine
30	chr5:40623200-40624400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr5:40623200-40627600	Weak transcription	HSMM	muscle
32	chr5:40623400-40623800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr5:40623400-40624000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr5:40623600-40624600	Flanking Active TSS	Dnd41	blood

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