Variant report

Variant	rs60081776
Chromosome Location	chr5:40609045-40609046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs45535631	1.00[AMR][1000 genomes]
rs56654220	1.00[AMR][1000 genomes]
rs59465929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
2	nsv4807	chr5:40570800-40615779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40606600-40610200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr5:40606600-40614800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:40606600-40622400	Weak transcription	HSMMtube	muscle
4	chr5:40607200-40615400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:40607600-40616200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:40607800-40610800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:40609000-40609400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:40609000-40609400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:40609000-40609800	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links