Variant report

Variant	rs59470891
Chromosome Location	chr6:166916859-166916860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166912409..166913951-chr6:166915712..166917232,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2235273	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:166890600-166925200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:166893000-166923200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:166893600-166921400	Weak transcription	Fetal Brain Male	brain
5	chr6:166894800-166928400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:166897600-166922400	Weak transcription	HSMMtube	muscle
7	chr6:166899400-166929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:166901400-166922000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:166902400-166917600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:166902400-166922600	Weak transcription	Thymus	Thymus
13	chr6:166902400-166923600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:166903000-166919200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:166903000-166925400	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:166903800-166922000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:166904000-166923800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:166905000-166925200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:166905000-166928200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:166905000-166928400	Weak transcription	HSMM	muscle
22	chr6:166906200-166921000	Weak transcription	Fetal Kidney	kidney
23	chr6:166906600-166923200	Strong transcription	Gastric	stomach
24	chr6:166906600-166923800	Strong transcription	Fetal Stomach	stomach
25	chr6:166906600-166925000	Strong transcription	Adipose Nuclei	Adipose
26	chr6:166906600-166925200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:166906800-166919800	Strong transcription	Brain Germinal Matrix	brain
28	chr6:166907000-166923200	Strong transcription	Fetal Brain Female	brain
29	chr6:166907800-166923000	Strong transcription	Lung	lung
30	chr6:166909200-166921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:166909200-166921800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:166909400-166928400	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
34	chr6:166910400-166923200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:166910600-166920600	Weak transcription	Fetal Lung	lung
36	chr6:166910600-166923400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:166910800-166923800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:166911000-166919000	Strong transcription	Pancreas	Pancrea
39	chr6:166911000-166922200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:166911000-166923200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:166911200-166928200	Weak transcription	NH-A	brain
42	chr6:166911400-166924400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:166911800-166917600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:166911800-166923800	Strong transcription	Stomach Smooth Muscle	stomach
45	chr6:166912200-166919400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:166912200-166927600	Weak transcription	HMEC	breast
47	chr6:166912200-166931200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:166912400-166918400	Strong transcription	Osteobl	bone
49	chr6:166912600-166918400	Strong transcription	Liver	Liver
50	chr6:166913000-166929000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links