Variant report

Variant	rs59483282
Chromosome Location	chr8:102846019-102846020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59368707..59371111-chr8:102843396..102846308,2	MCF-7	breast:
2	chr8:102841778..102844657-chr8:102844886..102847440,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59933698	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000008	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73277009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73277012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73277014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73277017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:102838600-102848400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:102842200-102851000	Weak transcription	Fetal Kidney	kidney
5	chr8:102843400-102846200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:102843800-102846800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:102843800-102848000	Enhancers	HMEC	breast
8	chr8:102844000-102846400	Enhancers	Stomach Smooth Muscle	stomach
9	chr8:102844000-102846800	Enhancers	Fetal Muscle Leg	muscle
10	chr8:102844200-102847200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:102844200-102847400	Weak transcription	Esophagus	oesophagus
12	chr8:102844400-102847000	Enhancers	Psoas Muscle	Psoas
13	chr8:102844600-102849400	Weak transcription	Right Ventricle	heart
14	chr8:102845200-102846400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:102845400-102846200	Weak transcription	Ovary	ovary
16	chr8:102845400-102846400	Weak transcription	Pancreas	Pancrea
17	chr8:102845400-102847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:102845400-102847400	Weak transcription	NHEK	skin
19	chr8:102845400-102847800	Weak transcription	Right Atrium	heart
20	chr8:102845400-102849400	Weak transcription	Fetal Heart	heart
21	chr8:102845400-102862000	Weak transcription	Left Ventricle	heart
22	chr8:102845600-102846800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr8:102845600-102855000	Weak transcription	Aorta	Aorta
24	chr8:102846000-102846200	Enhancers	Fetal Brain Male	brain

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