Variant report

Variant	rs59933698
Chromosome Location	chr8:102844166-102844167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59368707..59371111-chr8:102843396..102846308,2	MCF-7	breast:
2	chr8:102843199..102845818-chr8:102888680..102891293,2	MCF-7	breast:
3	chr8:102841778..102844657-chr8:102844886..102847440,3	K562	blood:
4	chr8:102842176..102845083-chr8:102849432..102850991,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1440256	1.00[ASN][1000 genomes]
rs1440257	1.00[ASN][1000 genomes]
rs1440258	1.00[ASN][1000 genomes]
rs16868551	1.00[ASN][1000 genomes]
rs16868553	1.00[ASN][1000 genomes]
rs58181251	1.00[ASN][1000 genomes]
rs59483282	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000008	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73277008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277012	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277017	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696518	1.00[ASN][1000 genomes]
rs73696521	1.00[ASN][1000 genomes]
rs73696644	1.00[ASN][1000 genomes]
rs7464196	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102835000-102844400	Weak transcription	Psoas Muscle	Psoas
3	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:102836200-102844400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:102836600-102844200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:102838600-102848400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:102840400-102844200	Weak transcription	HSMMtube	muscle
8	chr8:102840400-102844400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:102840600-102844200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:102840800-102845200	Weak transcription	Adipose Nuclei	Adipose
11	chr8:102842200-102851000	Weak transcription	Fetal Kidney	kidney
12	chr8:102843000-102845200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:102843000-102845400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:102843400-102846200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:102843600-102845600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:102843800-102844400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:102843800-102844400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr8:102843800-102844600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:102843800-102844600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:102843800-102844600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:102843800-102844600	Enhancers	Aorta	Aorta
22	chr8:102843800-102844600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr8:102843800-102844600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr8:102843800-102844600	Enhancers	Right Ventricle	heart
25	chr8:102843800-102844600	Enhancers	NHDF-Ad	bronchial
26	chr8:102843800-102844600	Enhancers	Osteobl	bone
27	chr8:102843800-102844800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:102843800-102844800	Enhancers	Brain Substantia Nigra	brain
29	chr8:102843800-102844800	Enhancers	Ovary	ovary
30	chr8:102843800-102844800	Enhancers	Pancreas	Pancrea
31	chr8:102843800-102844800	Enhancers	Right Atrium	heart
32	chr8:102843800-102845000	Enhancers	Brain Hippocampus Middle	brain
33	chr8:102843800-102845200	Enhancers	Brain Cingulate Gyrus	brain
34	chr8:102843800-102845200	Enhancers	Fetal Muscle Trunk	muscle
35	chr8:102843800-102845400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:102843800-102845400	Enhancers	Left Ventricle	heart
37	chr8:102843800-102845400	Enhancers	Rectal Smooth Muscle	rectum
38	chr8:102843800-102845400	Enhancers	NH-A	brain
39	chr8:102843800-102846000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:102843800-102846800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:102843800-102848000	Enhancers	HMEC	breast
42	chr8:102844000-102844200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr8:102844000-102844200	Enhancers	Esophagus	oesophagus
44	chr8:102844000-102844400	Enhancers	Fetal Brain Male	brain
45	chr8:102844000-102844600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr8:102844000-102844600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr8:102844000-102844600	Enhancers	Brain Angular Gyrus	brain
48	chr8:102844000-102844600	Enhancers	Lung	lung
49	chr8:102844000-102844800	Enhancers	Brain Anterior Caudate	brain
50	chr8:102844000-102845400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links