Variant report
| Variant | rs59494087 |
|---|---|
| Chromosome Location | chr12:45885799-45885800 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:45884919..45887471-chr12:46121844..46123759,2 | MCF-7 | breast: | |
| 2 | chr12:45885758..45887965-chr12:45892446..45895121,2 | K562 | blood: | |
| 3 | chr12:45883877..45886088-chr12:45891473..45895322,3 | MCF-7 | breast: | |
| 4 | chr12:45881557..45885323-chr12:45885771..45888559,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000189079 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs73285220 | 1.00[AFR][1000 genomes] |
| rs73285232 | 1.00[AFR][1000 genomes] |
| rs73285268 | 1.00[AFR][1000 genomes] |
| rs73285270 | 1.00[AFR][1000 genomes] |
| rs73285296 | 1.00[AFR][1000 genomes] |
| rs73286941 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832395 | chr12:45841765-46039297 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv508672 | chr12:45884730-45931091 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
