Variant report

Variant	rs59504371
Chromosome Location	chr13:39915076-39915077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17059659	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17068625	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57251095	0.81[ASN][1000 genomes]
rs59951480	0.88[ASN][1000 genomes]
rs7317937	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39904200-39923600	Weak transcription	Ovary	ovary
2	chr13:39907400-39915600	Weak transcription	Left Ventricle	heart
3	chr13:39910600-39922400	Weak transcription	Aorta	Aorta
4	chr13:39910600-39924400	Weak transcription	Adipose Nuclei	Adipose
5	chr13:39912400-39920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:39912400-39924600	Weak transcription	Fetal Lung	lung
7	chr13:39913000-39920000	Weak transcription	HSMM	muscle
8	chr13:39913200-39919800	Weak transcription	Right Ventricle	heart
9	chr13:39913200-39922400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:39914000-39922400	Weak transcription	Gastric	stomach
11	chr13:39914200-39924400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:39914400-39922800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr13:39914600-39916400	Weak transcription	Fetal Muscle Leg	muscle
14	chr13:39914800-39916600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:39914800-39916800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:39914800-39924600	Weak transcription	Fetal Stomach	stomach
17	chr13:39915000-39917200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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