Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12428000	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12583159	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12585476	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059611	0.84[ASN][1000 genomes]
rs17590635	0.88[EUR][1000 genomes]
rs17628742	0.91[EUR][1000 genomes]
rs17628771	1.00[EUR][1000 genomes]
rs2147130	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324252	0.84[ASN][1000 genomes]
rs58305678	0.82[ASN][1000 genomes]
rs58501663	0.89[EUR][1000 genomes]
rs59504371	0.81[ASN][1000 genomes]
rs60535758	0.91[EUR][1000 genomes]
rs6563695	0.91[EUR][1000 genomes]
rs7322148	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73451012	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73451015	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73467374	0.94[EUR][1000 genomes]
rs74044033	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs746077	0.84[ASN][1000 genomes]
rs746078	0.84[ASN][1000 genomes]
rs747382	0.84[ASN][1000 genomes]
rs747384	0.82[ASN][1000 genomes]
rs7990125	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7998423	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs912397	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39904200-39923600	Weak transcription	Ovary	ovary
2	chr13:39907400-39915600	Weak transcription	Left Ventricle	heart
3	chr13:39910600-39922400	Weak transcription	Aorta	Aorta
4	chr13:39910600-39924400	Weak transcription	Adipose Nuclei	Adipose
5	chr13:39911400-39914800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:39912000-39914800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:39912400-39920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:39912400-39924600	Weak transcription	Fetal Lung	lung
9	chr13:39913000-39920000	Weak transcription	HSMM	muscle
10	chr13:39913200-39919800	Weak transcription	Right Ventricle	heart
11	chr13:39913200-39922400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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