Variant report

Variant	rs17059611
Chromosome Location	chr13:39849440-39849441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12428000	0.80[ASN][1000 genomes]
rs12583780	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12585448	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12585451	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059609	0.89[AFR][1000 genomes]
rs17628476	0.90[EUR][1000 genomes]
rs17628483	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17628519	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2147130	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs2324252	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324254	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2324255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2324257	1.00[CEU][hapmap]
rs2875296	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2875298	1.00[CEU][hapmap]
rs57251095	0.84[ASN][1000 genomes]
rs58017746	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58305678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563698	0.85[JPT][hapmap]
rs7318557	0.81[JPT][hapmap]
rs74044033	0.84[ASN][1000 genomes]
rs746077	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746078	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7990125	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7998423	0.85[ASN][1000 genomes]
rs8253	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs912397	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39847800-39850200	Enhancers	Brain Substantia Nigra	brain
2	chr13:39848200-39849600	Enhancers	Adipose Nuclei	Adipose
3	chr13:39848200-39849600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr13:39848600-39849600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:39848800-39849600	Enhancers	Brain Angular Gyrus	brain
6	chr13:39848800-39849600	Enhancers	Brain Anterior Caudate	brain
7	chr13:39848800-39849800	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links