Variant report

Variant	rs2324254
Chromosome Location	chr13:39857938-39857939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39851217..39852850-chr13:39856701..39859168,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10507479	0.88[ASN][1000 genomes]
rs12583159	0.88[ASN][1000 genomes]
rs12583780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585476	0.88[ASN][1000 genomes]
rs17059611	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059636	0.84[AFR][1000 genomes]
rs17590635	0.88[ASN][1000 genomes]
rs17628476	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628742	0.88[ASN][1000 genomes]
rs17628771	0.88[ASN][1000 genomes]
rs1886171	0.88[ASN][1000 genomes]
rs2324252	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2324255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2875296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs34485296	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57158348	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58017746	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58305678	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58501663	0.88[ASN][1000 genomes]
rs59729125	0.88[ASN][1000 genomes]
rs60535758	0.82[ASN][1000 genomes]
rs6563695	0.88[ASN][1000 genomes]
rs7336602	0.84[ASN][1000 genomes]
rs73451015	0.81[ASN][1000 genomes]
rs73467374	0.81[ASN][1000 genomes]
rs746077	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs746078	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs747382	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs747384	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs768577	0.85[ASN][1000 genomes]
rs8253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs912397	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39856600-39858000	Enhancers	Pancreas	Pancrea
2	chr13:39857000-39858400	Weak transcription	Lung	lung
3	chr13:39857400-39858000	Enhancers	Fetal Kidney	kidney
4	chr13:39857600-39858000	Enhancers	Liver	Liver
5	chr13:39857800-39858000	Enhancers	Fetal Lung	lung
6	chr13:39857800-39858000	Enhancers	Gastric	stomach
7	chr13:39857800-39858000	Enhancers	Ovary	ovary
8	chr13:39857800-39859400	Enhancers	Fetal Muscle Leg	muscle

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