Variant report

Variant	rs57158348
Chromosome Location	chr13:39871742-39871743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10507479	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12583159	0.89[ASN][1000 genomes]
rs12583780	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12585448	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12585451	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12585476	0.89[ASN][1000 genomes]
rs17590635	0.89[ASN][1000 genomes]
rs17628476	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17628483	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17628519	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17628742	0.89[ASN][1000 genomes]
rs17628771	0.89[ASN][1000 genomes]
rs1886171	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2324254	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2324255	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2324257	0.81[AMR][1000 genomes]
rs2875296	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2875298	0.84[AMR][1000 genomes]
rs34485296	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58017746	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58501663	0.89[ASN][1000 genomes]
rs59729125	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60535758	0.83[ASN][1000 genomes]
rs6563695	0.89[ASN][1000 genomes]
rs7335974	0.80[AMR][1000 genomes]
rs7336602	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73451015	0.82[ASN][1000 genomes]
rs73467374	0.82[ASN][1000 genomes]
rs768577	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8253	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9315669	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv437164	chr13:39867227-39872237	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39868800-39881000	Weak transcription	Aorta	Aorta
2	chr13:39871000-39872200	Enhancers	HSMMtube	muscle
3	chr13:39871200-39872600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:39871600-39872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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