Variant report

Variant	rs1886171
Chromosome Location	chr13:39902693-39902694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10507479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583159	1.00[ASN][1000 genomes]
rs12583780	0.88[ASN][1000 genomes]
rs12585448	0.88[ASN][1000 genomes]
rs12585451	0.88[ASN][1000 genomes]
rs12585476	1.00[ASN][1000 genomes]
rs17590635	1.00[ASN][1000 genomes]
rs17628476	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17628483	0.88[ASN][1000 genomes]
rs17628519	0.88[ASN][1000 genomes]
rs17628742	1.00[ASN][1000 genomes]
rs17628771	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2324254	0.88[ASN][1000 genomes]
rs2324255	0.88[ASN][1000 genomes]
rs2324257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2875296	0.88[ASN][1000 genomes]
rs2875298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34485296	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57158348	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58017746	0.88[ASN][1000 genomes]
rs58501663	1.00[ASN][1000 genomes]
rs59729125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60535758	0.94[ASN][1000 genomes]
rs6563695	1.00[ASN][1000 genomes]
rs7336602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73451012	0.85[ASN][1000 genomes]
rs73451015	0.87[ASN][1000 genomes]
rs73467374	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs768577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39899400-39904000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:39899400-39904000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:39899400-39904000	Weak transcription	Gastric	stomach
4	chr13:39899400-39904800	Weak transcription	Left Ventricle	heart
5	chr13:39899600-39903400	Weak transcription	Ovary	ovary
6	chr13:39900400-39903600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:39900400-39906800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:39900800-39903400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr13:39901400-39903000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:39901400-39903200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:39901800-39902800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:39902200-39903400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:39902400-39904200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr13:39902400-39904200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr13:39902400-39904200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr13:39902600-39902800	Enhancers	Right Atrium	heart
17	chr13:39902600-39902800	Enhancers	Right Ventricle	heart
18	chr13:39902600-39903000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr13:39902600-39903000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr13:39902600-39903000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr13:39902600-39904200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr13:39902600-39904400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr13:39902600-39904400	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links