Variant report

Variant	rs768577
Chromosome Location	chr13:39915840-39915841
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10507479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12583159	0.91[ASN][1000 genomes]
rs12583780	0.85[ASN][1000 genomes]
rs12585448	0.85[ASN][1000 genomes]
rs12585451	0.85[ASN][1000 genomes]
rs12585476	0.91[ASN][1000 genomes]
rs1359193	0.85[GIH][hapmap]
rs17590635	0.91[ASN][1000 genomes]
rs17628476	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17628483	0.85[ASN][1000 genomes]
rs17628519	0.85[ASN][1000 genomes]
rs17628742	0.91[ASN][1000 genomes]
rs17628771	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1886171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324254	0.85[ASN][1000 genomes]
rs2324255	0.85[ASN][1000 genomes]
rs2324257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2875296	0.85[ASN][1000 genomes]
rs2875298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34485296	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57158348	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58017746	0.85[ASN][1000 genomes]
rs58501663	0.91[ASN][1000 genomes]
rs59729125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60535758	0.86[ASN][1000 genomes]
rs6563695	0.91[ASN][1000 genomes]
rs7336602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73451012	0.93[ASN][1000 genomes]
rs73451015	0.96[ASN][1000 genomes]
rs73467374	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs8253	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39904200-39923600	Weak transcription	Ovary	ovary
2	chr13:39910600-39922400	Weak transcription	Aorta	Aorta
3	chr13:39910600-39924400	Weak transcription	Adipose Nuclei	Adipose
4	chr13:39912400-39920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:39912400-39924600	Weak transcription	Fetal Lung	lung
6	chr13:39913000-39920000	Weak transcription	HSMM	muscle
7	chr13:39913200-39919800	Weak transcription	Right Ventricle	heart
8	chr13:39913200-39922400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:39914000-39922400	Weak transcription	Gastric	stomach
10	chr13:39914200-39924400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:39914400-39922800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr13:39914600-39916400	Weak transcription	Fetal Muscle Leg	muscle
13	chr13:39914800-39916600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:39914800-39916800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:39914800-39924600	Weak transcription	Fetal Stomach	stomach
16	chr13:39915000-39917200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr13:39915400-39916000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr13:39915600-39916200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:39915600-39918400	Strong transcription	Left Ventricle	heart
20	chr13:39915600-39919800	Weak transcription	Fetal Heart	heart
21	chr13:39915600-39920000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:39915800-39916000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:39915800-39917400	Weak transcription	HSMMtube	muscle
24	chr13:39915800-39921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr13:39915800-39924200	Weak transcription	Osteobl	bone

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