Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12583780	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12585448	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12585451	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17059609	0.89[AFR][1000 genomes]
rs17059611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17628476	0.82[EUR][1000 genomes]
rs17628483	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17628519	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2324252	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2324254	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2324255	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2875296	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57251095	0.82[ASN][1000 genomes]
rs58017746	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs74044033	0.82[ASN][1000 genomes]
rs746077	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs746078	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs747382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs747384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7998423	0.83[ASN][1000 genomes]
rs912397	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv900007	chr13:39801283-39849423	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39843000-39848600	Weak transcription	Left Ventricle	heart
2	chr13:39843200-39848200	Weak transcription	Right Atrium	heart
3	chr13:39847200-39849200	Enhancers	Brain Germinal Matrix	brain

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