Variant report

Variant	rs59506586
Chromosome Location	chr10:27989557-27989558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11015949	0.91[AFR][1000 genomes]
rs11015950	0.86[AFR][1000 genomes]
rs11015951	0.91[AFR][1000 genomes]
rs11015952	0.91[AFR][1000 genomes]
rs11015953	0.91[AFR][1000 genomes]
rs11015954	0.91[AFR][1000 genomes]
rs16928192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368248	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59950033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60014937	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60524104	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7078172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078877	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7898679	0.91[AFR][1000 genomes]
rs7912702	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3430719	chr10:27989546-27991744	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27984400-27990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:27984400-27990800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:27985400-27990800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:27985800-27990800	Weak transcription	Osteobl	bone
5	chr10:27985800-28001400	Weak transcription	Aorta	Aorta
6	chr10:27987200-27989600	Enhancers	Fetal Stomach	stomach
7	chr10:27987400-27990800	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:27988200-27990400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:27988400-27989600	Enhancers	Adipose Nuclei	Adipose
10	chr10:27988400-27989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:27988600-27989600	Enhancers	Liver	Liver
12	chr10:27988600-27989600	Enhancers	Stomach Smooth Muscle	stomach
13	chr10:27988800-27989600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:27988800-27989600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:27988800-27989600	Enhancers	NHDF-Ad	bronchial
16	chr10:27988800-27991000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:27988800-27991400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:27988800-27992000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:27989000-27990800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:27989000-27991000	Weak transcription	Ovary	ovary
21	chr10:27989200-27990400	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:27989200-27991600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr10:27989400-27990000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:27989400-27991400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr10:27989400-27991400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:27989400-27991600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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